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opm-simulators/examples/flow_solvent.cpp
Andreas Lauser 976d38bf37 implement abililty to change the geology during the simulation run 
i.e. it now supports stuff like MULTFLT in the schedule
section. Possibly, the MPI-parallel code paths need some fixes. (but
if the geology is not changed during the simulation, the parallel code
will do the same as before.)

the most fundamental change of this patch is that the
reference/pointer to the DerivedGeology object is made
non-constant. IMO that's okay, though, becase the geology can no
longer assumed to be constant over the whole simulation run.
2015-11-26 13:35:33 +01:00

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/*
Copyright 2013 SINTEF ICT, Applied Mathematics.
Copyright 2014 Dr. Blatt - HPC-Simulation-Software & Services
Copyright 2015 IRIS AS
This file is part of the Open Porous Media project (OPM).
OPM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
OPM is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with OPM. If not, see <http://www.gnu.org/licenses/>.
*/
#if HAVE_CONFIG_H
#include "config.h"
#endif // HAVE_CONFIG_H
#include <dune/common/version.hh>
#include <opm/common/utility/platform_dependent/disable_warnings.h>
#if DUNE_VERSION_NEWER(DUNE_COMMON, 2, 3)
#include <dune/common/parallel/mpihelper.hh>
#else
#include <dune/common/mpihelper.hh>
#endif
#if HAVE_DUNE_CORNERPOINT && WANT_DUNE_CORNERPOINTGRID
#define USE_DUNE_CORNERPOINTGRID 1
#include <dune/grid/CpGrid.hpp>
#include <dune/grid/common/GridAdapter.hpp>
#else
#undef USE_DUNE_CORNERPOINTGRID
#endif
#include <opm/common/utility/platform_dependent/reenable_warnings.h>
#include <opm/core/pressure/FlowBCManager.hpp>
#include <opm/core/grid.h>
#include <opm/core/grid/cornerpoint_grid.h>
#include <opm/core/grid/GridManager.hpp>
#include <opm/autodiff/GridHelpers.hpp>
#include <opm/autodiff/createGlobalCellArray.hpp>
#include <opm/core/wells.h>
#include <opm/core/wells/WellsManager.hpp>
#include <opm/common/ErrorMacros.hpp>
#include <opm/core/simulator/initState.hpp>
#include <opm/core/simulator/initStateEquil.hpp>
#include <opm/core/simulator/SimulatorReport.hpp>
#include <opm/core/simulator/SimulatorTimer.hpp>
#include <opm/core/utility/miscUtilities.hpp>
#include <opm/core/utility/parameters/ParameterGroup.hpp>
#include <opm/core/utility/thresholdPressures.hpp> // Note: the GridHelpers must be included before this (to make overloads available). \TODO: Fix.
#include <opm/material/fluidmatrixinteractions/EclMaterialLawManager.hpp>
#include <opm/core/props/BlackoilPropertiesBasic.hpp>
#include <opm/core/props/BlackoilPropertiesFromDeck.hpp>
#include <opm/core/props/rock/RockCompressibility.hpp>
#include <opm/core/linalg/LinearSolverFactory.hpp>
#include <opm/autodiff/NewtonIterationBlackoilSimple.hpp>
#include <opm/autodiff/NewtonIterationBlackoilCPR.hpp>
#include <opm/autodiff/NewtonIterationBlackoilInterleaved.hpp>
#include <opm/core/simulator/BlackoilState.hpp>
#include <opm/autodiff/WellStateFullyImplicitBlackoil.hpp>
#include <opm/autodiff/SimulatorFullyImplicitBlackoilSolvent.hpp>
#include <opm/autodiff/BlackoilPropsAdFromDeck.hpp>
#include <opm/autodiff/SolventPropsAdFromDeck.hpp>
#include <opm/autodiff/RedistributeDataHandles.hpp>
#include <opm/autodiff/moduleVersion.hpp>
#include <opm/core/utility/share_obj.hpp>
#include <opm/parser/eclipse/OpmLog/OpmLog.hpp>
#include <opm/parser/eclipse/OpmLog/StreamLog.hpp>
#include <opm/parser/eclipse/OpmLog/CounterLog.hpp>
#include <opm/parser/eclipse/Deck/Deck.hpp>
#include <opm/parser/eclipse/Parser/Parser.hpp>
#include <opm/parser/eclipse/Parser/ParseMode.hpp>
#include <opm/parser/eclipse/EclipseState/checkDeck.hpp>
#include <opm/parser/eclipse/EclipseState/EclipseState.hpp>
#include <boost/filesystem.hpp>
#include <boost/algorithm/string.hpp>
#include <memory>
#include <algorithm>
#include <cstdlib>
#include <iostream>
#include <vector>
#include <numeric>
#include <cstdlib>
namespace
{
void warnIfUnusedParams(const Opm::parameter::ParameterGroup& param)
{
if (param.anyUnused()) {
std::cout << "-------------------- Unused parameters: --------------------\n";
param.displayUsage();
std::cout << "----------------------------------------------------------------" << std::endl;
}
}
} // anon namespace
// ----------------- Main program -----------------
int
main(int argc, char** argv)
try
{
using namespace Opm;
#if USE_DUNE_CORNERPOINTGRID
// Must ensure an instance of the helper is created to initialise MPI.
const Dune::MPIHelper& mpi_helper = Dune::MPIHelper::instance(argc, argv);
const int mpi_rank = mpi_helper.rank();
const int mpi_size = mpi_helper.size();
#else
// default values for serial run
const int mpi_rank = 0;
const int mpi_size = 1;
#endif
// Write parameters used for later reference. (only if rank is zero)
const bool output_cout = ( mpi_rank == 0 );
if (output_cout)
{
std::string version = moduleVersionName();
std::cout << "**********************************************************************\n";
std::cout << "* *\n";
std::cout << "* This is Flow-Solvent (version " << version << ")"
<< std::string(18 - version.size(), ' ') << "*\n";
std::cout << "* *\n";
std::cout << "* Flow-Solvent is a simulator for fully implicit three-phase, *\n";
std::cout << "* four-component (black-oil + solvent) flow, and is part of OPM. *\n";
std::cout << "* For more information see http://opm-project.org *\n";
std::cout << "* *\n";
std::cout << "**********************************************************************\n\n";
}
// Read parameters, see if a deck was specified on the command line.
if ( output_cout )
{
std::cout << "--------------- Reading parameters ---------------" << std::endl;
}
parameter::ParameterGroup param(argc, argv, false, output_cout);
if( !output_cout )
{
param.disableOutput();
}
if (!param.unhandledArguments().empty()) {
if (param.unhandledArguments().size() != 1) {
std::cerr << "You can only specify a single input deck on the command line.\n";
return EXIT_FAILURE;
} else {
param.insertParameter("deck_filename", param.unhandledArguments()[0]);
}
}
// We must have an input deck. Grid and props will be read from that.
if (!param.has("deck_filename")) {
std::cerr << "This program must be run with an input deck.\n"
"Specify the deck filename either\n"
" a) as a command line argument by itself\n"
" b) as a command line parameter with the syntax deck_filename=<path to your deck>, or\n"
" c) as a parameter in a parameter file (.param or .xml) passed to the program.\n";
return EXIT_FAILURE;
}
// bool check_well_controls = false;
// int max_well_control_iterations = 0;
double gravity[3] = { 0.0 };
std::string deck_filename = param.get<std::string>("deck_filename");
// Write parameters used for later reference. (only if rank is zero)
bool output = ( mpi_rank == 0 ) && param.getDefault("output", true);
std::string output_dir;
if (output) {
// Create output directory if needed.
output_dir =
param.getDefault("output_dir", std::string("output"));
boost::filesystem::path fpath(output_dir);
try {
create_directories(fpath);
}
catch (...) {
std::cerr << "Creating directories failed: " << fpath << std::endl;
return EXIT_FAILURE;
}
// Write simulation parameters.
param.writeParam(output_dir + "/simulation.param");
}
std::string logFile = output_dir + "/LOGFILE.txt";
Opm::ParserPtr parser(new Opm::Parser());
{
std::shared_ptr<Opm::StreamLog> streamLog = std::make_shared<Opm::StreamLog>(logFile , Opm::Log::DefaultMessageTypes);
std::shared_ptr<Opm::CounterLog> counterLog = std::make_shared<Opm::CounterLog>(Opm::Log::DefaultMessageTypes);
Opm::OpmLog::addBackend( "STREAM" , streamLog );
Opm::OpmLog::addBackend( "COUNTER" , counterLog );
}
Opm::DeckConstPtr deck;
std::shared_ptr<EclipseState> eclipseState;
Opm::ParseMode parseMode({{ ParseMode::PARSE_RANDOM_SLASH , InputError::IGNORE }});
try {
deck = parser->parseFile(deck_filename, parseMode);
Opm::checkDeck(deck);
eclipseState.reset(new Opm::EclipseState(deck , parseMode));
}
catch (const std::invalid_argument& e) {
std::cerr << "Failed to create valid ECLIPSESTATE object. See logfile: " << logFile << std::endl;
std::cerr << "Exception caught: " << e.what() << std::endl;
return EXIT_FAILURE;
}
std::vector<double> porv = eclipseState->getDoubleGridProperty("PORV")->getData();
// UnstructuredGrid as grid manager
typedef UnstructuredGrid Grid;
GridManager gridManager( eclipseState->getEclipseGrid(), porv );
const Grid& grid = *(gridManager.c_grid());
// Possibly override IOConfig setting (from deck) for how often RESTART files should get written to disk (every N report step)
if (param.has("output_interval")) {
int output_interval = param.get<int>("output_interval");
IOConfigPtr ioConfig = eclipseState->getIOConfig();
ioConfig->overrideRestartWriteInterval((size_t)output_interval);
}
const PhaseUsage pu = Opm::phaseUsageFromDeck(deck);
std::vector<int> compressedToCartesianIdx;
Opm::createGlobalCellArray(grid, compressedToCartesianIdx);
typedef BlackoilPropsAdFromDeck::MaterialLawManager MaterialLawManager;
auto materialLawManager = std::make_shared<MaterialLawManager>();
materialLawManager->initFromDeck(deck, eclipseState, compressedToCartesianIdx);
// Rock and fluid init
BlackoilPropertiesFromDeck props( deck, eclipseState, materialLawManager,
Opm::UgGridHelpers::numCells(grid),
Opm::UgGridHelpers::globalCell(grid),
Opm::UgGridHelpers::cartDims(grid),
param);
BlackoilPropsAdFromDeck new_props( deck, eclipseState, materialLawManager, grid );
SolventPropsAdFromDeck solvent_props( deck, eclipseState, Opm::UgGridHelpers::numCells(grid), Opm::UgGridHelpers::globalCell(grid));
// check_well_controls = param.getDefault("check_well_controls", false);
// max_well_control_iterations = param.getDefault("max_well_control_iterations", 10);
// Rock compressibility.
RockCompressibility rock_comp(deck, eclipseState);
// Gravity.
gravity[2] = deck->hasKeyword("NOGRAV") ? 0.0 : unit::gravity;
BlackoilSolventState state;
// Init state variables (saturation and pressure).
if (param.has("init_saturation")) {
initStateBasic(Opm::UgGridHelpers::numCells(grid),
Opm::UgGridHelpers::globalCell(grid),
Opm::UgGridHelpers::cartDims(grid),
Opm::UgGridHelpers::numFaces(grid),
Opm::UgGridHelpers::faceCells(grid),
Opm::UgGridHelpers::beginFaceCentroids(grid),
Opm::UgGridHelpers::beginCellCentroids(grid),
Opm::UgGridHelpers::dimensions(grid),
props, param, gravity[2], state);
initBlackoilSurfvol(Opm::UgGridHelpers::numCells(grid), props, state);
enum { Oil = BlackoilPhases::Liquid, Gas = BlackoilPhases::Vapour };
if (pu.phase_used[Oil] && pu.phase_used[Gas]) {
const int numPhases = props.numPhases();
const int numCells = Opm::UgGridHelpers::numCells(grid);
for (int c = 0; c < numCells; ++c) {
state.gasoilratio()[c] = state.surfacevol()[c*numPhases + pu.phase_pos[Gas]]
/ state.surfacevol()[c*numPhases + pu.phase_pos[Oil]];
}
}
} else if (deck->hasKeyword("EQUIL") && props.numPhases() == 3) {
state.init(Opm::UgGridHelpers::numCells(grid),
Opm::UgGridHelpers::numFaces(grid),
props.numPhases());
const double grav = param.getDefault("gravity", unit::gravity);
initStateEquil(grid, props, deck, eclipseState, grav, state);
state.faceflux().resize(Opm::UgGridHelpers::numFaces(grid), 0.0);
} else {
initBlackoilStateFromDeck(Opm::UgGridHelpers::numCells(grid),
Opm::UgGridHelpers::globalCell(grid),
Opm::UgGridHelpers::numFaces(grid),
Opm::UgGridHelpers::faceCells(grid),
Opm::UgGridHelpers::beginFaceCentroids(grid),
Opm::UgGridHelpers::beginCellCentroids(grid),
Opm::UgGridHelpers::dimensions(grid),
props, deck, gravity[2], state);
}
// The capillary pressure is scaled in new_props to match the scaled capillary pressure in props.
if (deck->hasKeyword("SWATINIT")) {
const int numCells = Opm::UgGridHelpers::numCells(grid);
std::vector<int> cells(numCells);
for (int c = 0; c < numCells; ++c) { cells[c] = c; }
std::vector<double> pc = state.saturation();
props.capPress(numCells, state.saturation().data(), cells.data(), pc.data(),NULL);
new_props.setSwatInitScaling(state.saturation(),pc);
}
//state.solvent_saturation()[49] = 0.1;
//state.saturation()[49*3 + 2] -= 0.1;
bool use_gravity = (gravity[0] != 0.0 || gravity[1] != 0.0 || gravity[2] != 0.0);
const double *grav = use_gravity ? &gravity[0] : 0;
#if USE_DUNE_CORNERPOINTGRID
if(output_cout)
{
std::cout << std::endl << "Warning: use of local perm is not yet implemented for CpGrid!" << std::endl << std::endl;
}
const bool use_local_perm = false;
#else
const bool use_local_perm = param.getDefault("use_local_perm", true);
#endif
DerivedGeology geoprops(grid, new_props, eclipseState, use_local_perm, grav);
boost::any parallel_information;
// At this point all properties and state variables are correctly initialized
// If there are more than one processors involved, we now repartition the grid
// and initilialize new properties and states for it.
if( mpi_size > 1 )
{
Opm::distributeGridAndData( grid, deck, eclipseState, state, new_props, geoprops, materialLawManager, parallel_information, use_local_perm );
}
// create output writer after grid is distributed, otherwise the parallel output
// won't work correctly since we need to create a mapping from the distributed to
// the global view
Opm::BlackoilOutputWriter outputWriter(grid, param, eclipseState, pu, new_props.permeability() );
// Solver for Newton iterations.
std::unique_ptr<NewtonIterationBlackoilInterface> fis_solver;
if (param.getDefault("use_interleaved", true)) {
fis_solver.reset(new NewtonIterationBlackoilInterleaved(param));
} else if (param.getDefault("use_cpr", true)) {
fis_solver.reset(new NewtonIterationBlackoilCPR(param));
} else {
fis_solver.reset(new NewtonIterationBlackoilSimple(param, parallel_information));
}
Opm::ScheduleConstPtr schedule = eclipseState->getSchedule();
Opm::TimeMapConstPtr timeMap(schedule->getTimeMap());
SimulatorTimer simtimer;
// initialize variables
simtimer.init(timeMap);
std::map<std::pair<int, int>, double> maxDp;
computeMaxDp(maxDp, deck, eclipseState, grid, state, props, gravity[2]);
std::vector<double> threshold_pressures = thresholdPressures(deck, eclipseState, grid, maxDp);
SimulatorFullyImplicitBlackoilSolvent< Grid > simulator(param,
grid,
geoprops,
new_props,
solvent_props,
rock_comp.isActive() ? &rock_comp : 0,
*fis_solver,
grav,
deck->hasKeyword("DISGAS"),
deck->hasKeyword("VAPOIL"),
eclipseState,
outputWriter,
deck,
threshold_pressures,
deck->hasKeyword("SOLVENT") );
if (!schedule->initOnly()){
if( output_cout )
{
std::cout << "\n\n================ Starting main simulation loop ===============\n"
<< std::flush;
}
SimulatorReport fullReport = simulator.run(eclipseState, simtimer, state);
if( output_cout )
{
std::cout << "\n\n================ End of simulation ===============\n\n";
fullReport.reportFullyImplicit(std::cout);
}
if (output) {
std::string filename = output_dir + "/walltime.txt";
std::fstream tot_os(filename.c_str(),std::fstream::trunc | std::fstream::out);
fullReport.reportParam(tot_os);
warnIfUnusedParams(param);
}
} else {
outputWriter.writeInit( simtimer );
if ( output_cout )
{
std::cout << "\n\n================ Simulation turned off ===============\n" << std::flush;
}
}
}
catch (const std::exception &e) {
std::cerr << "Program threw an exception: " << e.what() << "\n";
return EXIT_FAILURE;
}
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