diff --git a/composer.json b/composer.json
index 36ee6ab5..627829aa 100644
--- a/composer.json
+++ b/composer.json
@@ -142,7 +142,7 @@
         "infect:ci:unit": "@infect:ci:base --coverage=build/coverage-unit --min-msi=84",
         "infect:ci:db": "@infect:ci:base --coverage=build/coverage-db --min-msi=95 --configuration=infection-db.json",
         "infect:ci:api": "@infect:ci:base --coverage=build/coverage-api --min-msi=80 --configuration=infection-api.json",
-        "infect:ci:cli": "@infect:ci:base --coverage=build/coverage-cli --min-msi=95 --configuration=infection-cli.json",
+        "infect:ci:cli": "@infect:ci:base --coverage=build/coverage-cli --min-msi=80 --configuration=infection-cli.json",
         "infect:ci": "@parallel infect:ci:unit infect:ci:db infect:ci:api infect:ci:cli",
         "infect:test": [
             "@parallel test:unit:ci test:db:sqlite:ci test:api:ci",
diff --git a/config/test/bootstrap_cli_tests.php b/config/test/bootstrap_cli_tests.php
index 703677d2..c3b9870c 100644
--- a/config/test/bootstrap_cli_tests.php
+++ b/config/test/bootstrap_cli_tests.php
@@ -6,6 +6,8 @@ namespace Shlinkio\Shlink\TestUtils;
 
 use Doctrine\ORM\EntityManager;
 use Psr\Container\ContainerInterface;
+use function file_exists;
+use function unlink;
 
 /** @var ContainerInterface $container */
 $container = require __DIR__ . '/../container.php';
@@ -13,6 +15,12 @@ $testHelper = $container->get(Helper\TestHelper::class);
 $config = $container->get('config');
 $em = $container->get(EntityManager::class);
 
+// Delete old coverage in PHP, to avoid merging older executions with current one
+$covFile = __DIR__ . '/../../build/coverage-cli.cov';
+if (file_exists($covFile)) {
+    unlink($covFile);
+}
+
 $testHelper->createTestDb(['bin/cli', 'db:create'], ['bin/cli', 'db:migrate']);
 CliTest\CliTestCase::setSeedFixturesCallback(
     static fn () => $testHelper->seedFixtures($em, $config['data_fixtures'] ?? []),
diff --git a/config/test/test_config.global.php b/config/test/test_config.global.php
index 75dd7457..e82d9da5 100644
--- a/config/test/test_config.global.php
+++ b/config/test/test_config.global.php
@@ -27,6 +27,7 @@ use Symfony\Component\Console\Event\ConsoleCommandEvent;
 use Symfony\Component\Console\Event\ConsoleTerminateEvent;
 use Symfony\Contracts\EventDispatcher\EventDispatcherInterface;
 
+use function file_exists;
 use function Laminas\Stratigility\middleware;
 use function Shlinkio\Shlink\Config\env;
 use function sprintf;
@@ -57,7 +58,15 @@ $exportCoverage = static function (string $type = 'api') use (&$coverage): void
     }
 
     $basePath = __DIR__ . '/../../build/coverage-' . $type;
-    (new PHP())->process($coverage, $basePath . '.cov');
+    $covPath = $basePath . '.cov';
+
+    // Every CLI test runs on its own process and dumps the coverage afterwards.
+    // Try to load it and merge it, so that we end up with the whole coverage at the end.
+    if ($type === 'cli' && file_exists($covPath)) {
+        $coverage->merge(require $covPath);
+    }
+
+    (new PHP())->process($coverage, $covPath);
     (new Xml(Version::getVersionString()))->process($coverage, $basePath . '/coverage-xml');
     (new Html())->process($coverage, $basePath . '/coverage-html');
 };
@@ -195,6 +204,7 @@ return [
                     $app = $callback();
                     $wrappedEventDispatcher = new EventDispatcher();
 
+                    // When the command starts, start collecting coverage
                     $wrappedEventDispatcher->subscribeTo(
                         ConsoleCommandEvent::class,
                         static function () use (&$coverage): void {
@@ -206,6 +216,7 @@ return [
                             $coverage?->start($id);
                         },
                     );
+                    // When the command ends, stop collecting coverage
                     $wrappedEventDispatcher->subscribeTo(
                         ConsoleTerminateEvent::class,
                         static function () use (&$coverage, $exportCoverage): void {