[cantera]: moving some folders around

Cantera/Makefile.am

@@ -1,4 +1,4 @@
 # $Id: $
 
 # will need to add python and matlab 
-SUBDIRS                 = src user cxx
+SUBDIRS                 = src user cxx ext

Cantera/cxx/include/importPhase.h

@@ -3,8 +3,8 @@
 
 #include <string>
 
-#include "kernel/ThermoPhase.h"
-#include "kernel/ThermoFactory.h"
+#include "ThermoPhase.h"
+#include "ThermoFactory.h"
 
 /*
  * The Definitions for these functions are all located in 

Cantera/cxx/src/Makefile.am

@@ -1,6 +1,6 @@
 cc_sources              = importPhase.cpp
 
-AM_CPPFLAGS             = -I/workspace/src/cantera/pecos_autotools/build/include/cantera
+AM_CPPFLAGS             = -I$(top_builddir)/build/include
 AM_CXXFLAGS             = $(AM_CPPFLAGS)
 
 lib_LTLIBRARIES         = $(top_builddir)/build/lib/libctcxx.la
@@ -14,4 +14,9 @@ library_include_HEADERS = $(h_sources)
 __top_builddir__build_lib_libctcxx_la_LDFLAGS      = $(all_libraries) -release $(GENERIC_RELEASE)
 __top_builddir__build_lib_libctcxx_la_SOURCES      = $(cc_sources) $(h_sources)
 
+# header file accumulation
+all:
+	@echo copying headers $<
+	cp ../include/*.h $(top_builddir)/build/include/
+
 CLEANFILES = *.o

Cantera/cxx/src/importPhase.cpp

@@ -4,8 +4,8 @@
 
 #include <string>
 
-#include "kernel/ThermoPhase.h"
-#include "kernel/ThermoFactory.h"
+#include "ThermoPhase.h"
+#include "ThermoFactory.h"
 
 namespace Cantera {}