Fix a number of issues with Webpack

A few of these squeezed by QA and testing:

* badge_only.css was copied to the static output path, it wasn't
  actually building it seems. Added second entry for this to make it
  easier.
* jQuery was not being treated as an external library and was vendored
  into our JS bundle!
* Having the fonts in a relative path from CSS ('../fonts'), causes CORS
  issues. Moved `/fonts` to `/sphinx_rtd_theme/static/css/fonts` essentially
* The dev server wasn't compiling assets consistently for me, tuned it hopefully

Requires #807

sphinx_rtd_theme/static/css/badge_only.css

@@ -1 +1 @@
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sphinx_rtd_theme/static/css/theme.css

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src/index.js

@@ -1,3 +0,0 @@
-import './sass/theme.sass';
-import './sass/badge_only.sass';
-import './theme.js';

webpack.common.js

@@ -2,11 +2,17 @@ const path = require("path");
 const MiniCssExtractPlugin = require("mini-css-extract-plugin");
 
 module.exports = {
-  entry: "./src/index.js",
+  entry: {
+    theme: ["./src/theme.js", "./src/sass/theme.sass"],
+    badge_only: "./src/sass/badge_only.sass"
+  },
   output: {
-    filename: "js/theme.js",
+    filename: "js/[name].js?[hash]",
     path: path.resolve(__dirname, "sphinx_rtd_theme/static")
   },
+  externals: {
+    jquery: "jQuery"
+  },
   module: {
     rules: [
       {
@@ -17,7 +23,11 @@ module.exports = {
         test: /\.sass$/,
         use: [
           {
-            loader: MiniCssExtractPlugin.loader
+            loader: MiniCssExtractPlugin.loader,
+            options: {
+              hmr: false,
+              reloadAll: true
+            }
           },
           {
             loader: "css-loader"
@@ -42,8 +52,8 @@ module.exports = {
             loader: "file-loader",
             options: {
               name: "[name].[ext]?[hash]",
-              outputPath: "fonts/",
-              publicPath: "../fonts/"
+              outputPath: "css/fonts/",
+              publicPath: "fonts/"
             }
           }
         ]
@@ -52,9 +62,8 @@ module.exports = {
   },
   plugins: [
     new MiniCssExtractPlugin({
-      // Options similar to the same options in webpackOptions.output
-      // both options are optional
-      filename: "css/theme.css"
+      filename: "css/[name].css?[hash]",
+      chunkFilename: "css/[name].css?[hash]"
     })
   ]
 };