Added initialization script for Imbibition (bash)

workflows/imbibition/InitializeImbibition.sh

@@ -0,0 +1,20 @@
+#!/bin/bash
+
+# Run morphological analysis and set up input files for media
+LABEL="sph1964"
+#aprun -n 64 $LBPM_WIA_INSTALL_DIR/bin/lbpm_morph_pp $r > morph.log
+echo "Quartile Radius" > poresize.quartiles
+grep -A4 Quartile morph.log | tail -4 >> poresize.quartiles
+python ~/LBPM-WIA/workflows/imbibition/setup-imbibition.py $LABEL
+
+FILES=$(ls | grep "drain_")
+
+for src in $FILES; do  
+     dest=$(echo $src | sed 's/drain_/imb_/g')
+     echo "Initializing $dest from primary drainage"
+     cp -r $src $dest
+     cp Color.in.imbibition $dest/Color.in
+done
+
+exit;
+