Commit Graph

3580 Commits

Author SHA1 Message Date
Mark Berrill
5109c08bc3 Initial hip addition 2020-10-07 12:31:49 -04:00
Rex Zhe Li
d40de38c48 save the work;results needs to be validated 2020-10-05 11:03:35 -04:00
Rex Zhe Li
88063edb97 save the work;upgrade output data writing by writing single file instead of decomposed data 2020-10-01 16:27:46 -04:00
Rex Zhe Li
a02288631a fix dumb bug of asssigning inverse of tau 2020-09-29 15:48:39 -04:00
Rex Zhe Li
471e78703a add some print-out for debugging 2020-09-29 13:22:25 -04:00
Rex Zhe Li
4657adbc94 add routine for ion model to read from file 2020-09-28 17:08:49 -04:00
Rex Zhe Li
a1f375e86c Merge branch 'electrokinetic_dev' into electrokinetic 2020-09-25 17:09:37 -04:00
Rex Zhe Li
4c1ce54a6d found that higher-order terms in Ion BGK not very useful 2020-09-25 17:09:25 -04:00
Rex Zhe Li
e529caf6fe finish BC tweak 2020-09-25 17:02:16 -04:00
Rex Zhe Li
33fdfeb29d add a routine for single-fluid greyscale to read from file - voxel porosity and perm 2020-09-24 21:57:04 -04:00
Rex Zhe Li
471f71d690 save the work; untested; add a routine of read from file for greyscale simulator 2020-09-23 22:15:05 -04:00
Rex Zhe Li
f9d3376951 Merge branch 'Greyscale_stable_dev' of github.com:JamesEMcClure/LBPM-WIA into Greyscale_stable_dev 2020-09-23 17:47:12 -04:00
Rex Zhe Li
226147a498 save the work of read from user-input file 2020-09-23 17:47:02 -04:00
James McClure
85844ec8e3 template for read from file 2020-09-23 15:21:15 -04:00
James McClure
fd27b3138a tweak BC conventions 2020-09-23 14:53:46 -04:00
James McClure
11be793575 use periodic BC in ScaLBL (model specific BC possible) 2020-09-23 12:30:22 -04:00
James McClure
0d6231f1cb read BC from model database 2020-09-22 14:33:51 -04:00
Rex Zhe Li
f0c7882639 add higher-order term in Ion equilibrium distribution 2020-09-21 23:54:28 -04:00
Rex Zhe Li
039978cc81 GPU version is available now 2020-09-20 11:00:36 -04:00
Rex Zhe Li
11e9af54b6 CPU only;finish preliminary work on testing Poisson and Ion models and their coupling 2020-09-11 22:56:00 -04:00
Rex Zhe Li
20c8cc9c3b update PoissonSolver and fix numerous bugs 2020-09-02 11:37:23 -04:00
James McClure
b64431f335 Merge branch 'master' into Greyscale_stable 2020-08-31 16:12:51 -04:00
Rex Zhe Li
ae9e7a0408 fix integer index bug in AggregateLabels in morphdrain 2020-08-29 13:11:56 -04:00
Rex Zhe Li
0b480294b5 fix spill of integer index in AggregateLabels 2020-08-29 12:22:20 -04:00
Rex Zhe Li
86a1bb81a1 resolve merge conflict 2020-08-28 21:58:29 -04:00
Rex Zhe Li
0a7b1c331b further clean up the code 2020-08-28 21:53:41 -04:00
JamesEMcclure
a7afd9b429 fix poisson solver for unit test 2020-08-28 13:37:36 -04:00
James McClure
75e8647051 re-factor electric solvers for unit testing 2020-08-28 13:31:43 -04:00
Rex Zhe Li
aa26fcafda fix miscellaneous bugs and update the data structure of electric potential 2020-08-28 11:15:55 -04:00
Rex Zhe Li
59ffd7bfd6 fix several miscellaneous bugs 2020-08-20 22:47:10 -04:00
Rex Zhe Li
d24198e76a done cleaning up the code 2020-08-19 22:22:35 -04:00
Rex Zhe Li
030bec9eba fix trivial bug in tau initialization 2020-08-19 18:56:06 -04:00
Rex Zhe Li
8996b582da still debugging; add a few checkpoint print out 2020-08-19 13:21:31 -04:00
Rex Zhe Li
d8a1837ba0 save the work; to be continued to clean up the code 2020-08-19 11:31:32 -04:00
Rex Zhe Li
2180f7b2bf resolve merge conflict 2020-08-18 18:02:28 -04:00
Rex Zhe Li
5756d6f138 fix a few trivial bugs; add some checkpoint print; still debugging 2020-08-18 12:40:41 -04:00
Rex Zhe Li
771f679f5c add output; CPU version compiled; to be tested 2020-08-17 09:59:22 -04:00
Rex Zhe Li
85fc59190c save the work;CPU version compiled; to be tested 2020-08-16 11:20:11 -04:00
Rex Zhe Li
3adde14ecf resolve merge conflicts 2020-08-14 14:26:32 -04:00
Rex Zhe Li
3a162849a0 save the work;untested 2020-08-14 14:23:22 -04:00
James McClure
30014a49c0 add zeta potential to Poisson 2020-08-11 16:52:56 -04:00
JamesEMcclure
6ff5a9a8ae fixed bugs in bounceback list 2020-08-11 15:34:12 -04:00
James McClure
e0b0e05664 added bounce-back interaction capability 2020-08-11 15:16:40 -04:00
James McClure
3592ac7562 distinguish parallel comm / bounceback sites at halo 2020-08-11 14:35:46 -04:00
James McClure
b4d50ee821 example for how to structure ion comm loop 2020-08-10 12:54:55 -04:00
Rex Zhe Li
28988ef6ba save the work;untested 2020-08-10 12:03:28 -04:00
Rex Zhe Li
dff4e3d536 save the work;to be continued 2020-08-07 17:44:02 -04:00
James McClure
d9cde3c76c use generalized D3Q7 MPI structures for multi-ion 2020-08-06 16:12:18 -04:00
JamesEMcclure
fcdb84b2ad electro skeleton compiles 2020-08-06 16:06:52 -04:00
James McClure
082a0a30f5 Adding skeleton for electrokinetic LBM 2020-08-06 15:42:36 -04:00