 James McClure
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7c790e8802
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updating membrane communication structure
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2022-05-11 23:37:18 -04:00 |
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James McClure
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9f76e7b1e8
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update to cell vis routine
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2022-05-06 19:03:19 -04:00 |
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James McClure
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c424e1d984
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cleanup with help from valgrind
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2022-05-06 16:21:37 -04:00 |
|
 Zhe Li
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ba6d438630
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this makes mpi hang error explicit;to be debugged
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2022-05-04 14:34:31 +10:00 |
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 Zhe Rex Li
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de52cf53b9
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add more tweaks for cell simulator
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2022-05-03 16:32:42 +10:00 |
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 Zhe Li
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025987e53b
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make further corrections
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2022-04-28 23:59:13 +10:00 |
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 Zhe Li
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754b1ad9d9
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update executable list and NP_cell simulator
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2022-04-27 14:04:11 +10:00 |
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Zhe Rex Li
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86be316977
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merge membrane into test_poisson
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2022-04-27 12:04:53 +10:00 |
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James McClure
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e3518e3482
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added membrane properties to input db
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2022-04-26 18:07:26 -04:00 |
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Zhe Rex Li
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614b002725
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remove Stokes solver from cell simulator; need to test build
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2022-04-26 11:41:14 +10:00 |
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Zhe Rex Li
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17f80b4637
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merge the latest membrane into test_poisson
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2022-04-26 11:16:44 +10:00 |
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 James E McClure
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429413ce3b
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fix charge density (i think)
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2022-04-24 16:48:12 -04:00 |
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James E McClure
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9043751281
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debug crusher
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2022-04-24 14:55:59 -04:00 |
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James E McClure
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36a5204882
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a bunch of summit debug things to roll back later
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2022-04-24 11:04:11 -04:00 |
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Zhe Li
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58e246c941
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fix bugs in importing ion model's dummy velocity
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2022-04-14 11:53:26 +10:00 |
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 Zhe Li
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c281c0cfda
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fix dumb bugs
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2022-04-13 14:53:23 +10:00 |
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 Zhe Li
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cc693c93f5
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fix a few syntax bugs and build passed
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2022-04-12 12:49:28 +10:00 |
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Zhe Rex Li
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e1ebbce812
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initialize nernst-planck simulator; to be built subject to debugging
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2022-04-12 11:40:39 +10:00 |
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James McClure
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25b17f996c
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membrane transport test passing
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2022-04-06 22:43:42 -04:00 |
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James McClure
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9c013e6169
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testing membrane ion transport
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2022-04-06 22:25:05 -04:00 |
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James E McClure
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cd34f11c38
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cuda build succeeds
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2022-03-28 18:59:30 -04:00 |
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James E McClure
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f99af45c9b
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Merge branch 'membrane' into tmp
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2022-03-27 16:03:26 -04:00 |
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James E McClure
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6911e97c29
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merge master with crusher
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2022-03-27 16:02:56 -04:00 |
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James McClure
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2c3272e423
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updates and fix for user input reader
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2022-03-22 17:31:12 -04:00 |
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James McClure
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16275ce1b9
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werkin
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2022-03-21 19:44:21 -04:00 |
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James McClure
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702eaae1c1
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try at membrane simulator
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2022-03-18 18:08:44 -04:00 |
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James McClure
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c94d4e5194
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membrane structure in IonModel
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2022-03-18 11:23:01 -04:00 |
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zherexli
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ece735e0e7
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fix dumb print bug
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2022-03-18 14:29:29 +11:00 |
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James McClure
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91cf379e86
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poking at MF issue
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2022-03-08 22:13:48 -05:00 |
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James McClure
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dd9da41d4b
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added cell simulator
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2022-02-24 21:43:18 -05:00 |
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James McClure
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896e6ee27b
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add cell simulator
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2022-02-21 16:49:42 -05:00 |
|
 Mark Berrill
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61e0714595
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Updating calculation of bandwidth
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2022-02-10 16:47:37 -05:00 |
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Mark Berrill
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f329e424a4
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Removing TestCrusher tests, the bug deals with the StackTrace which we disable the multistack trace for now. Moving the test out of LBPM
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2022-02-10 14:04:27 -05:00 |
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Mark Berrill
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7787f9e8f1
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Created standalone MPI failure test
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2022-02-10 14:02:40 -05:00 |
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James E McClure
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e657971ee0
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Merge branch 'Crusher' of github.com:JamesEMcClure/LBPM-WIA into Crusher
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2022-02-10 13:43:41 -05:00 |
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James E McClure
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6b0b8daddd
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hang fix / workaround
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2022-02-10 13:43:31 -05:00 |
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Mark Berrill
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1c63baea09
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Still trying to create standalone reproducer
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2022-02-10 12:16:25 -05:00 |
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Mark Berrill
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86834d5b99
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Getting closer to stand alone test
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2022-02-10 12:06:44 -05:00 |
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Mark Berrill
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ad9f68d9fb
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Working on standalone MPI test on crusher
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2022-02-10 11:53:20 -05:00 |
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Mark Berrill
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51667854c1
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Working on standalone MPI test on crusher
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2022-02-10 11:46:17 -05:00 |
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Mark Berrill
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7a6654de60
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Reverting TestCrusher2, standalone version passes (TestCrusher3.cpp), need to figure out why
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2022-02-09 18:01:34 -05:00 |
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Mark Berrill
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9affb84db3
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More work on creating standalone test
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2022-02-09 17:54:28 -05:00 |
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Mark Berrill
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9d7fccab63
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More work on creating standalone test
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2022-02-09 17:52:05 -05:00 |
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Mark Berrill
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e21125901b
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More work on creating standalone test
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2022-02-09 17:40:09 -05:00 |
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Mark Berrill
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736ab1c101
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Merge branch 'Crusher' of github.com:JamesEMcClure/LBPM-WIA into Crusher
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2022-02-09 17:01:05 -05:00 |
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Mark Berrill
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8c448376d9
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Working on standalone reproducer for MPI bug
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2022-02-09 17:01:00 -05:00 |
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James E McClure
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e2f198759d
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Merge branch 'Crusher' of github.com:JamesEMcClure/LBPM-WIA into Crusher
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2022-02-09 16:48:08 -05:00 |
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James E McClure
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d1a45a3b1e
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disable MPI thread multiple for crusher
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2022-02-09 16:40:30 -05:00 |
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Mark Berrill
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2237df73eb
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Adding new crusher MPI test
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2022-02-09 16:36:09 -05:00 |
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James E McClure
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05712e6a16
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Merge branch 'Crusher' of github.com:JamesEMcClure/LBPM-WIA into Crusher
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2022-02-09 16:11:34 -05:00 |
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