James McClure
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777e216b35
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restart for Poisson model
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2022-07-29 18:11:32 -04:00 |
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James McClure
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1c903a3380
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add performance counters to ion / poisson solvers
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2022-06-11 20:49:01 -04:00 |
|
James McClure
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7c790e8802
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updating membrane communication structure
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2022-05-11 23:37:18 -04:00 |
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James McClure
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e677b0395f
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add barrier to membrane transport
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2022-05-09 06:32:58 -04:00 |
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James McClure
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cf2b69e7ee
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fix missing bracket
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2022-05-07 19:36:14 -04:00 |
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James McClure
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459d6064c1
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merge to membrane
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2022-05-06 20:41:03 -04:00 |
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James McClure
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c424e1d984
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cleanup with help from valgrind
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2022-05-06 16:21:37 -04:00 |
|
Zhe Rex Li
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01ffcce379
|
update print-out
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2022-05-03 17:10:26 +10:00 |
|
Zhe Rex Li
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de52cf53b9
|
add more tweaks for cell simulator
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2022-05-03 16:32:42 +10:00 |
|
Zhe Li
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9c2c216af8
|
udpate output precision
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2022-05-03 15:55:40 +10:00 |
|
Zhe Rex Li
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6959a02f7b
|
correct ion LB collison
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2022-05-03 15:00:00 +10:00 |
|
Zhe Li
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678925ec15
|
correct use_membrane functionality
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2022-04-28 15:22:23 +10:00 |
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James McClure
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e3518e3482
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added membrane properties to input db
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2022-04-26 18:07:26 -04:00 |
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James E McClure
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429413ce3b
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fix charge density (i think)
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2022-04-24 16:48:12 -04:00 |
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James E McClure
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3642a6ae9b
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debug charge density problems on crusher
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2022-04-24 15:55:23 -04:00 |
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James E McClure
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9043751281
|
debug crusher
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2022-04-24 14:55:59 -04:00 |
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James E McClure
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36a5204882
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a bunch of summit debug things to roll back later
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2022-04-24 11:04:11 -04:00 |
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James McClure
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d3dc35c018
|
fix bad ref to D3Q7
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2022-04-22 14:30:03 -04:00 |
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James McClure
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481a258fbd
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read Membrane ion concentration list
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2022-04-19 10:53:16 -04:00 |
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James McClure
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b51968c677
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print membrane input concentration
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2022-04-19 07:46:53 -04:00 |
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James McClure
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85e99df3f3
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add membrane concentration init
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2022-04-14 22:57:23 -04:00 |
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James McClure
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2bb2be845a
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membrane starts working ok...
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2022-04-08 16:44:37 -04:00 |
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James McClure
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3715ed98b0
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Merge branch 'membrane' of github.com:JamesEMcClure/LBPM-WIA into membrane
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2022-04-01 06:58:49 -04:00 |
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James McClure
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39a04e38ab
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getting ready to merge gpu
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2022-04-01 06:58:43 -04:00 |
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James E McClure
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f99af45c9b
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Merge branch 'membrane' into tmp
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2022-03-27 16:03:26 -04:00 |
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James McClure
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8a0937e111
|
add sigmoid to ion equilibrium dist
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2022-03-24 07:38:06 -04:00 |
|
James McClure
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4927e54707
|
add single cell example
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2022-03-20 15:13:53 -04:00 |
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James McClure
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3522d35de1
|
read input files
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2022-03-20 13:32:24 -04:00 |
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James McClure
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51c88f0055
|
cell simulator runs
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2022-03-20 11:22:46 -04:00 |
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James McClure
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702eaae1c1
|
try at membrane simulator
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2022-03-18 18:08:44 -04:00 |
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James McClure
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bfe1de6be2
|
membrane structure in IonModel
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2022-03-18 11:20:09 -04:00 |
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James McClure
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e8d0b0b48a
|
adding membrane functions
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2022-03-18 11:06:16 -04:00 |
|
zherexli
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0105155d2f
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update comments in ion model
|
2022-03-17 11:35:48 +11:00 |
|
Thomas Ramstad
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23189f5577
|
Clang format (#55)
Run clang-format on modules of code
|
2021-11-08 22:58:37 +01:00 |
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Rex Zhe Li
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afc7d6c90e
|
add routines to save advective and electromigrational flux;CPU only;to be verified
|
2021-10-13 15:15:12 +11:00 |
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Rex Zhe Li
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3f5175c9ba
|
build passes after fixing various dumb syntax bugs;model to be verified
|
2021-09-29 02:10:35 -04:00 |
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Rex Zhe Li
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01499e672d
|
continue the work of storing ion diffusive flux;incomplete.
|
2021-09-29 15:41:38 +10:00 |
|
Rex Zhe Li
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c3300baf1e
|
set up reading user-specified multi-species ion concentration; to be verified
|
2021-09-14 10:53:03 +10:00 |
|
James McClure
|
81c80ff0f4
|
compiler warnings
|
2021-08-31 20:32:02 -04:00 |
|
Rex Zhe Li
|
de909820f8
|
merge master into FOM_dev
|
2021-06-27 19:53:52 -04:00 |
|
JamesEMcclure
|
6985aa7647
|
kill more warnings
|
2021-06-09 15:53:04 -04:00 |
|
JamesEMcclure
|
7af46f30e6
|
fix compiler warnings
|
2021-06-09 14:52:58 -04:00 |
|
Rex Zhe Li
|
803f907edd
|
downgrade CMake version to 3.10.0; fix minor bugs and build
|
2021-05-25 03:05:46 -04:00 |
|
Rex Zhe Li
|
536fc6e8c0
|
update ion flux BC; to be built and tested
|
2021-05-25 01:59:24 -04:00 |
|
Rex Zhe Li
|
c7b6ac7290
|
make minor change so MPI barrier is in the right place now
|
2021-05-07 03:18:31 -04:00 |
|
Mark Berrill
|
5c27e3830a
|
Fixing compile errors without MPI
|
2021-02-12 13:43:26 -05:00 |
|
JamesEMcclure
|
0fe3125833
|
merging multi-halo
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2021-01-13 21:44:23 -05:00 |
|
James McClure
|
7f4f74779c
|
fix the build
|
2021-01-05 18:43:44 -05:00 |
|
James McClure
|
5bcc10c5fb
|
refactor new models to FOM
|
2021-01-05 13:51:32 -05:00 |
|
James McClure
|
77c2949b07
|
werkin
|
2021-01-05 00:15:36 -05:00 |
|