Commit Graph

4506 Commits

Author SHA1 Message Date
Zhe Rex Li
17f80b4637 merge the latest membrane into test_poisson 2022-04-26 11:16:44 +10:00
James E McClure
429413ce3b fix charge density (i think) 2022-04-24 16:48:12 -04:00
James E McClure
3642a6ae9b debug charge density problems on crusher 2022-04-24 15:55:23 -04:00
James E McClure
9043751281 debug crusher 2022-04-24 14:55:59 -04:00
James E McClure
eadb420d06 update hip 2022-04-24 14:54:49 -04:00
James E McClure
91d8fbe751 Merge branch 'membrane' of github.com:JamesEMcClure/LBPM-WIA into membrane 2022-04-24 11:04:47 -04:00
James McClure
418bc82953 fix poisson typo 2022-04-24 11:04:33 -04:00
James E McClure
36a5204882 a bunch of summit debug things to roll back later 2022-04-24 11:04:11 -04:00
James McClure
dd5dbbd51c deprecate old error methods 2022-04-24 11:00:17 -04:00
James McClure
d964eee29c update hip poisson solver 2022-04-24 11:00:03 -04:00
James E McClure
0224ecdcff fix typo 2022-04-22 20:41:49 -04:00
James McClure
cf4f2b63da update error analysis for Poisson solver 2022-04-22 15:17:52 -04:00
James McClure
d3dc35c018 fix bad ref to D3Q7 2022-04-22 14:30:03 -04:00
James McClure
481a258fbd read Membrane ion concentration list 2022-04-19 10:53:16 -04:00
James McClure
b51968c677 print membrane input concentration 2022-04-19 07:46:53 -04:00
James McClure
2cbb4ce8cd update print 2022-04-19 07:33:21 -04:00
James McClure
7eaaced8d9 add barriers to poisson solver 2022-04-18 08:45:49 -04:00
James McClure
e613cba376 remove print staetements 2022-04-16 17:14:22 -04:00
James McClure
b183252947 remove bad warnings 2022-04-15 22:50:16 -04:00
James McClure
85e99df3f3 add membrane concentration init 2022-04-14 22:57:23 -04:00
Zhe Li
58e246c941 fix bugs in importing ion model's dummy velocity 2022-04-14 11:53:26 +10:00
James McClure
aa8783141d small change 2022-04-13 20:39:59 -04:00
Zhe Li
e7c227bd9f fix bugs in initializing electric potential; the Psi on solid was accidentally overwritten before. 2022-04-13 16:56:26 +10:00
Zhe Li
c281c0cfda fix dumb bugs 2022-04-13 14:53:23 +10:00
James McClure
adeecbd122 add GPU functions for d3q19 poisson 2022-04-12 23:29:46 -04:00
James McClure
8fd8799ff9 update cell example 2022-04-12 20:51:13 -04:00
Zhe Rex Li
0f68c118de Poisson solver; enable specifying initial values 2022-04-12 16:12:12 +10:00
Zhe Li
cc693c93f5 fix a few syntax bugs and build passed 2022-04-12 12:49:28 +10:00
Zhe Rex Li
e1ebbce812 initialize nernst-planck simulator; to be built subject to debugging 2022-04-12 11:40:39 +10:00
James McClure
032a21a872 Poisson working pretty good now 2022-04-10 22:21:34 -04:00
James McClure
d0e41bf834 d319 poisson works good 2022-04-10 17:25:29 -04:00
James McClure
eb1c5da99c still broken wang 2022-04-10 16:08:35 -04:00
James McClure
cd970d64a3 Merge branch 'membrane-rex-d3q19' into membrane-wang 2022-04-10 12:34:31 -04:00
James McClure
b182d04833 tau from wang paper 2022-04-10 11:32:53 -04:00
James McClure
b3dfc014d8 rex d3q19 (broken) 2022-04-10 11:05:53 -04:00
James McClure
9c63613373 original wang poisson solver (broken) 2022-04-10 09:51:02 -04:00
James McClure
2bb2be845a membrane starts working ok... 2022-04-08 16:44:37 -04:00
James McClure
25b17f996c membrane transport test passing 2022-04-06 22:43:42 -04:00
James McClure
9c013e6169 testing membrane ion transport 2022-04-06 22:25:05 -04:00
James McClure
cca06f7964 add testing functions to ScaLBL 2022-04-06 20:44:14 -04:00
James McClure
4758bdffa9 refactor compact AA routines for testing 2022-04-06 20:34:12 -04:00
James McClure
3715ed98b0 Merge branch 'membrane' of github.com:JamesEMcClure/LBPM-WIA into membrane 2022-04-01 06:58:49 -04:00
James McClure
39a04e38ab getting ready to merge gpu 2022-04-01 06:58:43 -04:00
James E McClure
b6c2e7de3a update crusher script 2022-03-31 07:23:04 -04:00
James McClure
75240ef7cd Merge branch 'master' of github.com:OPM/LBPM 2022-03-29 15:02:01 -04:00
James McClure
f5fdba8458 fix broken zlib download path 2022-03-29 15:01:43 -04:00
JamesEMcClure
68dd158689
Merge pull request #64 from thomaram/adjust_perm
Add perm converter
2022-03-29 04:49:27 -04:00
James E McClure
cd34f11c38 cuda build succeeds 2022-03-28 18:59:30 -04:00
James E McClure
f99af45c9b Merge branch 'membrane' into tmp 2022-03-27 16:03:26 -04:00
James E McClure
6911e97c29 merge master with crusher 2022-03-27 16:02:56 -04:00