James McClure
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9c013e6169
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testing membrane ion transport
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2022-04-06 22:25:05 -04:00 |
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James E McClure
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cd34f11c38
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cuda build succeeds
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2022-03-28 18:59:30 -04:00 |
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James E McClure
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f99af45c9b
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Merge branch 'membrane' into tmp
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2022-03-27 16:03:26 -04:00 |
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James E McClure
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6911e97c29
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merge master with crusher
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2022-03-27 16:02:56 -04:00 |
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James McClure
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2c3272e423
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updates and fix for user input reader
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2022-03-22 17:31:12 -04:00 |
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James McClure
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16275ce1b9
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werkin
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2022-03-21 19:44:21 -04:00 |
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James McClure
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702eaae1c1
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try at membrane simulator
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2022-03-18 18:08:44 -04:00 |
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James McClure
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c94d4e5194
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membrane structure in IonModel
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2022-03-18 11:23:01 -04:00 |
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zherexli
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ece735e0e7
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fix dumb print bug
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2022-03-18 14:29:29 +11:00 |
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James McClure
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91cf379e86
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poking at MF issue
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2022-03-08 22:13:48 -05:00 |
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James McClure
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dd9da41d4b
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added cell simulator
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2022-02-24 21:43:18 -05:00 |
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James McClure
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896e6ee27b
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add cell simulator
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2022-02-21 16:49:42 -05:00 |
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Mark Berrill
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61e0714595
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Updating calculation of bandwidth
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2022-02-10 16:47:37 -05:00 |
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Mark Berrill
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f329e424a4
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Removing TestCrusher tests, the bug deals with the StackTrace which we disable the multistack trace for now. Moving the test out of LBPM
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2022-02-10 14:04:27 -05:00 |
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Mark Berrill
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7787f9e8f1
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Created standalone MPI failure test
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2022-02-10 14:02:40 -05:00 |
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James E McClure
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e657971ee0
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Merge branch 'Crusher' of github.com:JamesEMcClure/LBPM-WIA into Crusher
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2022-02-10 13:43:41 -05:00 |
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James E McClure
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6b0b8daddd
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hang fix / workaround
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2022-02-10 13:43:31 -05:00 |
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Mark Berrill
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1c63baea09
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Still trying to create standalone reproducer
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2022-02-10 12:16:25 -05:00 |
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Mark Berrill
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86834d5b99
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Getting closer to stand alone test
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2022-02-10 12:06:44 -05:00 |
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Mark Berrill
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ad9f68d9fb
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Working on standalone MPI test on crusher
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2022-02-10 11:53:20 -05:00 |
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Mark Berrill
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51667854c1
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Working on standalone MPI test on crusher
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2022-02-10 11:46:17 -05:00 |
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Mark Berrill
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7a6654de60
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Reverting TestCrusher2, standalone version passes (TestCrusher3.cpp), need to figure out why
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2022-02-09 18:01:34 -05:00 |
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Mark Berrill
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9affb84db3
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More work on creating standalone test
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2022-02-09 17:54:28 -05:00 |
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Mark Berrill
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9d7fccab63
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More work on creating standalone test
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2022-02-09 17:52:05 -05:00 |
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Mark Berrill
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e21125901b
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More work on creating standalone test
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2022-02-09 17:40:09 -05:00 |
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Mark Berrill
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736ab1c101
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Merge branch 'Crusher' of github.com:JamesEMcClure/LBPM-WIA into Crusher
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2022-02-09 17:01:05 -05:00 |
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Mark Berrill
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8c448376d9
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Working on standalone reproducer for MPI bug
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2022-02-09 17:01:00 -05:00 |
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James E McClure
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e2f198759d
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Merge branch 'Crusher' of github.com:JamesEMcClure/LBPM-WIA into Crusher
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2022-02-09 16:48:08 -05:00 |
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James E McClure
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d1a45a3b1e
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disable MPI thread multiple for crusher
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2022-02-09 16:40:30 -05:00 |
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Mark Berrill
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2237df73eb
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Adding new crusher MPI test
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2022-02-09 16:36:09 -05:00 |
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James E McClure
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05712e6a16
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Merge branch 'Crusher' of github.com:JamesEMcClure/LBPM-WIA into Crusher
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2022-02-09 16:11:34 -05:00 |
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Mark Berrill
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43f18cb4fd
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Adding simple crusher test
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2022-02-09 16:11:04 -05:00 |
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James E McClure
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9a2e71c53d
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working on fix
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2022-02-09 14:06:49 -05:00 |
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James E McClure
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1f6d37208e
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fix whitespace merge issue
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2022-02-03 09:15:28 -05:00 |
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Rex Zhe Li
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d8ac0cc043
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fix dumb typo
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2022-01-31 00:30:37 -05:00 |
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Zhe Rex Li
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ba14aecf35
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try to fix time conversion factor for Poisson solver; to be built and tested
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2022-01-31 12:23:36 +11:00 |
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Zhe Rex Li
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ea90e9f875
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Merge branch 'master' into slipping_vel_debug
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2022-01-28 16:29:30 +11:00 |
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James McClure
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f49b281d29
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add initial radius option to morphdrain
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2022-01-26 12:41:58 -05:00 |
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James McClure
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66fc855608
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convention for inside / outside membrane link direction
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2022-01-19 16:18:29 -05:00 |
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Rex Zhe Li
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169a102f6c
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fix a few typos and bug and build passed
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2022-01-18 01:15:35 -05:00 |
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Rex Zhe Li
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ee527a42cc
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update Poisson and Stoke solvers to include slipping velocity BC; to be built
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2022-01-18 16:46:09 +11:00 |
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James McClure
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6a62500a0c
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update membrane test
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2022-01-14 10:59:04 -05:00 |
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James McClure
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35bea97b2e
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update morph test based on critical radius adjustment
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2022-01-12 16:07:59 -05:00 |
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James McClure
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30e0a4e24b
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fix bug in morphopen
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2022-01-12 14:31:12 -05:00 |
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James McClure
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0fb6fbfd7a
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update membrane test
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2022-01-12 09:48:04 -05:00 |
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James McClure
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ec76dc9a3b
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membrane test
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2021-12-28 17:21:11 -05:00 |
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James McClure
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74bf7dbec4
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membrane compiles
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2021-12-28 16:59:44 -05:00 |
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James McClure
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6d82dc83a2
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add membrane unit test
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2021-12-28 16:12:49 -05:00 |
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James E McClure
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5b33e96984
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update build script for summit
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2021-12-21 15:49:11 -05:00 |
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James E McClure
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7523114937
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merge color profiling
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2021-12-21 11:38:16 -05:00 |
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