Commit Graph

  • 86be316977 merge membrane into test_poisson Zhe Rex Li 2022-04-27 12:04:53 +1000
  • 8ea560ca66 update cell db James McClure 2022-04-26 19:01:30 -0400
  • e3518e3482 added membrane properties to input db James McClure 2022-04-26 18:07:26 -0400
  • 3e82370d6c update cpu ion valence James McClure 2022-04-26 06:37:08 -0400
  • 614b002725 remove Stokes solver from cell simulator; need to test build Zhe Rex Li 2022-04-26 11:41:14 +1000
  • 17f80b4637 merge the latest membrane into test_poisson Zhe Rex Li 2022-04-26 11:16:44 +1000
  • 429413ce3b fix charge density (i think) James E McClure 2022-04-24 16:48:12 -0400
  • 3642a6ae9b debug charge density problems on crusher James E McClure 2022-04-24 15:55:23 -0400
  • 9043751281 debug crusher James E McClure 2022-04-24 14:55:59 -0400
  • eadb420d06 update hip James E McClure 2022-04-24 14:54:49 -0400
  • 91d8fbe751 Merge branch 'membrane' of github.com:JamesEMcClure/LBPM-WIA into membrane James E McClure 2022-04-24 11:04:47 -0400
  • 418bc82953 fix poisson typo James McClure 2022-04-24 11:04:33 -0400
  • 36a5204882 a bunch of summit debug things to roll back later James E McClure 2022-04-24 11:04:11 -0400
  • dd5dbbd51c deprecate old error methods James McClure 2022-04-24 11:00:17 -0400
  • d964eee29c update hip poisson solver James McClure 2022-04-24 11:00:03 -0400
  • 0224ecdcff fix typo James E McClure 2022-04-22 20:41:49 -0400
  • cf4f2b63da update error analysis for Poisson solver James McClure 2022-04-22 15:17:52 -0400
  • d3dc35c018 fix bad ref to D3Q7 James McClure 2022-04-22 14:30:03 -0400
  • 481a258fbd read Membrane ion concentration list James McClure 2022-04-19 10:53:16 -0400
  • b51968c677 print membrane input concentration James McClure 2022-04-19 07:46:53 -0400
  • 2cbb4ce8cd update print James McClure 2022-04-19 07:33:21 -0400
  • 7eaaced8d9 add barriers to poisson solver James McClure 2022-04-18 08:45:49 -0400
  • e613cba376 remove print staetements James McClure 2022-04-16 17:14:22 -0400
  • b183252947 remove bad warnings James McClure 2022-04-15 22:50:16 -0400
  • 85e99df3f3 add membrane concentration init James McClure 2022-04-14 22:57:23 -0400
  • 58e246c941 fix bugs in importing ion model's dummy velocity Zhe Li 2022-04-14 11:53:26 +1000
  • aa8783141d small change James McClure 2022-04-13 20:39:59 -0400
  • e7c227bd9f fix bugs in initializing electric potential; the Psi on solid was accidentally overwritten before. Zhe Li 2022-04-13 16:56:26 +1000
  • c281c0cfda fix dumb bugs Zhe Li 2022-04-13 14:53:23 +1000
  • adeecbd122 add GPU functions for d3q19 poisson James McClure 2022-04-12 23:29:46 -0400
  • 8fd8799ff9 update cell example James McClure 2022-04-12 20:51:13 -0400
  • 0f68c118de Poisson solver; enable specifying initial values Zhe Rex Li 2022-04-12 16:12:12 +1000
  • cc693c93f5 fix a few syntax bugs and build passed Zhe Li 2022-04-12 12:49:28 +1000
  • e1ebbce812 initialize nernst-planck simulator; to be built subject to debugging Zhe Rex Li 2022-04-12 11:40:39 +1000
  • 032a21a872 Poisson working pretty good now James McClure 2022-04-10 22:21:34 -0400
  • d0e41bf834 d319 poisson works good James McClure 2022-04-10 17:25:29 -0400
  • eb1c5da99c still broken wang James McClure 2022-04-10 16:08:35 -0400
  • cd970d64a3 Merge branch 'membrane-rex-d3q19' into membrane-wang James McClure 2022-04-10 12:34:31 -0400
  • b182d04833 tau from wang paper James McClure 2022-04-10 11:32:53 -0400
  • b3dfc014d8 rex d3q19 (broken) James McClure 2022-04-10 11:05:53 -0400
  • 9c63613373 original wang poisson solver (broken) James McClure 2022-04-10 09:51:02 -0400
  • 2bb2be845a membrane starts working ok... James McClure 2022-04-08 16:44:37 -0400
  • 25b17f996c membrane transport test passing James McClure 2022-04-06 22:43:42 -0400
  • 9c013e6169 testing membrane ion transport James McClure 2022-04-06 22:25:05 -0400
  • cca06f7964 add testing functions to ScaLBL James McClure 2022-04-06 20:44:14 -0400
  • 4758bdffa9 refactor compact AA routines for testing James McClure 2022-04-06 20:34:12 -0400
  • 3715ed98b0 Merge branch 'membrane' of github.com:JamesEMcClure/LBPM-WIA into membrane James McClure 2022-04-01 06:58:49 -0400
  • 39a04e38ab getting ready to merge gpu James McClure 2022-04-01 06:58:43 -0400
  • b6c2e7de3a update crusher script James E McClure 2022-03-31 07:23:04 -0400
  • 75240ef7cd Merge branch 'master' of github.com:OPM/LBPM v2022.08-rc1 James McClure 2022-03-29 15:02:01 -0400
  • f5fdba8458 fix broken zlib download path James McClure 2022-03-29 15:01:43 -0400
  • 68dd158689
    Merge pull request #64 from thomaram/adjust_perm JamesEMcClure 2022-03-29 04:49:27 -0400
  • cd34f11c38 cuda build succeeds James E McClure 2022-03-28 18:59:30 -0400
  • f99af45c9b Merge branch 'membrane' into tmp James E McClure 2022-03-27 16:03:26 -0400
  • 6911e97c29 merge master with crusher James E McClure 2022-03-27 16:02:56 -0400
  • de2fe8b3a9 Merge branch 'master' of github.com:JamesEMcClure/LBPM-WIA James E McClure 2022-03-27 16:01:20 -0400
  • 24f069c43f Add perm converter Thomas Ramstad 2022-03-24 23:39:46 +0100
  • 8a0937e111 add sigmoid to ion equilibrium dist James McClure 2022-03-24 07:38:06 -0400
  • 7172364660 update cell example James McClure 2022-03-22 20:03:34 -0400
  • 2c3272e423 updates and fix for user input reader James McClure 2022-03-22 17:31:12 -0400
  • 8ae69e4c1e start on hip function James McClure 2022-03-21 19:53:05 -0400
  • 18602c7516 start on cuda function James McClure 2022-03-21 19:51:09 -0400
  • 16275ce1b9 werkin James McClure 2022-03-21 19:44:21 -0400
  • 0a1057926d start on cuda function James McClure 2022-03-21 19:44:04 -0400
  • 70b12830cb
    Merge pull request #63 from thomaram/adjust_perm JamesEMcClure 2022-03-21 14:16:13 -0400
  • 286e779459 refining cell example James McClure 2022-03-20 18:01:19 -0400
  • 4927e54707 add single cell example James McClure 2022-03-20 15:13:53 -0400
  • 3522d35de1 read input files James McClure 2022-03-20 13:32:24 -0400
  • 51c88f0055 cell simulator runs James McClure 2022-03-20 11:22:46 -0400
  • 9e3a07d419 add python script to generate bubble James McClure 2022-03-20 09:30:46 -0400
  • a50d9e9aa6 add python script to generate bubble James McClure 2022-03-20 09:29:42 -0400
  • 702eaae1c1 try at membrane simulator James McClure 2022-03-18 18:08:44 -0400
  • 766dfc299a Correct typo Thomas Ramstad 2022-03-18 18:51:21 +0100
  • 2a5df51bb2 Add adjusted perms Thomas Ramstad 2022-03-18 17:04:18 +0100
  • c94d4e5194 membrane structure in IonModel James McClure 2022-03-18 11:23:01 -0400
  • bfe1de6be2 membrane structure in IonModel James McClure 2022-03-18 11:20:09 -0400
  • bfa6f5e5b8 move membrane to common folder James McClure 2022-03-18 11:09:34 -0400
  • e8d0b0b48a adding membrane functions James McClure 2022-03-18 11:06:16 -0400
  • 1abb9adea6 clean up relabel James McClure 2022-03-18 11:05:50 -0400
  • fe2496ebdd Add film corrected eff perms trams@equinor.com 2022-03-18 14:54:47 +0100
  • ece735e0e7 fix dumb print bug zherexli 2022-03-18 14:29:29 +1100
  • 0105155d2f update comments in ion model zherexli 2022-03-17 11:35:48 +1100
  • 12026f54d4 update to membrane capability James McClure 2022-03-14 16:16:47 -0400
  • abf5823de6 membrane data structures compiling James McClure 2022-03-11 05:39:34 -0500
  • d1bbc2171f Merge branch 'master' of github.com:JamesEMcClure/LBPM-WIA James E McClure 2022-03-08 22:14:55 -0500
  • ecb882bc75 update crusher build James E McClure 2022-03-08 22:14:42 -0500
  • 91cf379e86 poking at MF issue James McClure 2022-03-08 22:13:48 -0500
  • 39feb20ec9 add membrane unpack function James E McClure 2022-03-07 16:47:19 -0500
  • f270604e6b add membrane transport function for d3q7 James E McClure 2022-03-07 15:36:16 -0500
  • 3065ce1f28 Merge branch 'master' of github.com:JamesEMcClure/LBPM-WIA James E McClure 2022-03-06 00:22:50 -0500
  • 77eba8c48a Merge branch 'master' of github.com:JamesEMcClure/LBPM-WIA James E McClure 2022-03-05 07:47:22 -0500
  • 00d1f36867 Merge branch 'master' of github.com:JamesEMcClure/LBPM-WIA James McClure 2022-03-04 19:05:14 -0500
  • b39dd1a474 make sure halo is filled when measuring object James McClure 2022-03-04 18:59:11 -0500
  • dd9da41d4b added cell simulator James McClure 2022-02-24 21:43:18 -0500
  • 896e6ee27b add cell simulator James McClure 2022-02-21 16:49:42 -0500
  • 5bbda39fdb working on membrane communication structures James McClure 2022-02-21 16:39:24 -0500
  • 033477ee95 Merge branch 'Crusher' of github.com:JamesEMcClure/LBPM-WIA into Crusher James E McClure 2022-02-12 01:49:10 -0500
  • 101f3a8f44 crusher hackathon final version James E McClure 2022-02-12 01:39:30 -0500
  • 61e0714595 Updating calculation of bandwidth Mark Berrill 2022-02-10 16:47:37 -0500
  • 074ea746f2 Merge branch 'Crusher' of github.com:JamesEMcClure/LBPM-WIA into Crusher James E McClure 2022-02-10 16:41:34 -0500