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824 Commits

Author SHA1 Message Date
Markus Blatt
b5ad44bdee
Merge pull request #5161 from totto82/coordssys 
Ignore Coordsys and print a warning
 2024-02-06 16:19:09 +01:00
Arne Morten Kvarving
ed88fa583c add missing include 2024-02-06 10:41:36 +01:00
Tor Harald Sandve
2ed3f924f2 Ignore Coordsys and print a warning 2024-02-06 09:29:10 +01:00
Arne Morten Kvarving
d6f59c1d4b
Merge pull request #5134 from lisajulia/feature/NONNC 
Feature/NONNC
 2024-02-01 15:13:58 +01:00
Arne Morten Kvarving
aa37225ad1 GridDataOutput: use implicit std::string constructor 2024-01-30 13:19:13 +01:00
Arne Morten Kvarving
a588d4196d GridDataOutput: avoid stringstream member 2024-01-30 13:19:12 +01:00
Arne Morten Kvarving
54c386ae2c GridDataOutput: add const correctness 2024-01-30 13:19:00 +01:00
Arne Morten Kvarving
26d3802ea6 GridDataOutput: remove parantheses in return statements 2024-01-30 13:19:00 +01:00
Arne Morten Kvarving
02fbadb809 GridDataOutput: add translation unit 2024-01-30 13:18:59 +01:00
Bård Skaflestad
008e1c93c3
Merge pull request #5133 from akva2/damarisvar_cleanup 
DamarisVar: Some cleanup
 2024-01-30 11:01:07 +01:00
Bård Skaflestad
7a4a060594
Merge pull request #5130 from akva2/hdf5serializer_move 
HDF5Serializer: move out of ebos folder
 2024-01-30 10:50:22 +01:00
Arne Morten Kvarving
498f1b6b50 DamarisVar: remove unused base class DamarisVarBase 
no reason to pay the price of virtual dispatch when nothing
use the base class
 2024-01-30 09:58:37 +01:00
Arne Morten Kvarving
bee1555d25 DamarisVar::TestType: simplify using a lambda 2024-01-30 09:54:31 +01:00
Arne Morten Kvarving
bdc0790eb8 DamarisVar::returnXMLForVariable: simplify using fmt 2024-01-30 09:36:31 +01:00
Arne Morten Kvarving
033943e42e DamarisXMLAttributes::ReturnXMLForVariable 
simplify using lambda and for_each
 2024-01-30 09:34:00 +01:00
Arne Morten Kvarving
cfd5af89b0 DamarisVar: avoid stringstream member 2024-01-30 09:25:18 +01:00
Arne Morten Kvarving
3f842cd67f DamarisVar: add translation unit 2024-01-30 09:02:20 +01:00
Arne Morten Kvarving
4f76bd0972 DamarisVar: make TestType private 2024-01-30 09:01:25 +01:00
Arne Morten Kvarving
125431f326 DamarisVar: remove paranthesis is return statements 
not consistent with code style
 2024-01-30 09:01:25 +01:00
Arne Morten Kvarving
aa2af11016 DamarisVar: make accessors const 2024-01-30 08:58:32 +01:00
Arne Morten Kvarving
8ad5e3a974 DamarisVar: mark virtual method overrides as such 2024-01-30 08:32:23 +01:00
Arne Morten Kvarving
3024379bed DamarisVar: remove void in parameter lists 
not consistent with the code style
 2024-01-30 08:26:20 +01:00
Arne Morten Kvarving
3849febe99 DamarisVar: pass parameters by reference 2024-01-30 08:20:04 +01:00
Arne Morten Kvarving
3d1b4796fd DamarisVar: remove empty string assignment 
strings are properly empty initialized
 2024-01-30 08:15:32 +01:00
Lisa Julia Nebel
e346315fa2 Remove NONNC from the UnsopportedFlowKeywordList 2024-01-29 18:46:59 +01:00
Arne Morten Kvarving
99b4aae148 Damaris: avoid signed/unsigned comparison warnings 
while at it use std::size_t
 2024-01-29 14:34:31 +01:00
Arne Morten Kvarving
800422bd17 HDF5Serializer: add translation unit 2024-01-29 10:00:48 +01:00
Arne Morten Kvarving
96a3a6d45a changed: move hdf5serializer to opm/simulators/utils/HDF5Serializer.hpp 
does not interact with typetag system
 2024-01-29 09:42:49 +01:00
Arne Morten Kvarving
98c704c1c3 changed: move ebos/eclmpiserializer.hh to opm/simulators/utils/MPISerializer.hpp 
it does not use the typetag system
 2024-01-23 10:51:32 +01:00
Arne Morten Kvarving
ec9c704def cosmetics and header cleanups in damaris classes 2024-01-10 14:16:02 +01:00
Arne Morten Kvarving
ed28d7c9ef changed: move damaris command line properties to separate file 
to avoid pulling in the whole writer in DamarisKeywords.hpp
 2024-01-10 14:16:02 +01:00
Arne Morten Kvarving
240e0dd04f fixed: add header guard to DamarisOutputModule.hpp 2024-01-10 14:16:02 +01:00
Markus Blatt
0c01a3ac50 Mark keywords SKIP, SKIP100, SKIP300, and ENDSKIP as supported. 
Follow up to OPM/opm-common#3817 which implements the support for
these keywords.
 2024-01-02 11:06:33 +01:00
Atgeirr Flø Rasmussen
01b76e2658 Order variables the same as in constructor init list. 2023-12-15 14:23:55 +01:00
Atgeirr Flø Rasmussen
1dbd971710
Merge pull request #4889 from jcbowden/damariswriter-for-sim-fields-v5 
Geometric mesh data added for Damaris in-situ visualisation
 2023-12-15 10:18:00 +01:00
Josh Bowden
4db49a3785 Reformat using clag-format with default OPM format guide 2023-12-14 17:30:21 +01:00
Josh Bowden
8094504018 Jenkins build error issue fix for unused typedefs 2023-12-14 12:39:18 +01:00
Josh Bowden
55dc80725f Improved in-line help comments; output MPI cell values to HDF5 only when saving mesh to HDF5; removed timing data 2023-12-14 10:27:05 +01:00
Josh Bowden
e16cd9a3b3 finalise the PR 4889 modifications - added command line option to specifiy the shared memory file name in the <buffer> XML element --damaris-shared-memory-name which will be a randomised string opm-damaris-<random-string> for better multi-simulation behaviour when running more than one simulation on a single node. 2023-12-13 18:14:45 +01:00
Josh Bowden
757a96941a final review changes from PR 4889 and added extra command line argument to output mesh data --damaris-save-mesh-to-hdf 2023-12-13 18:14:37 +01:00
Josh Bowden
9309f5a1bd overhaul of GridDataOutput class to accept a vector type so that raw pointers are not overrun, this has lead to finding a good way to get the size of the data area that is alloacted by the DamarisVar wrapper class for damaris_alloc() 2023-12-13 18:14:06 +01:00
Josh Bowden
54d6db6f35 Update 1 for code after code review of PR 4889 2023-12-13 18:13:55 +01:00
Bård Skaflestad
5c9e86666c Publish Short Region Set Names Only 
That way, in-place quantities will go through the short-to-canonical
name translation in FieldProps regardless of their origin--e.g.,
RPTSOL/RPTSCHED or explicit SUMMARY section vectors.
 2023-12-11 17:01:40 +01:00
Josh Bowden
0f1d31c88a sets the SHMEM buffer name to be the same as the simulation name, usefull if running multiple simulations on the same machine, so that buffers are not removed by other simulations 2023-12-08 11:00:22 +01:00
Josh Bowden
89fabf132e adding command line option to specify the dask file being used --damaris-dask-file= that will add the file name to the Daamris XML configuration file 2023-12-08 10:59:51 +01:00
Arne Morten Kvarving
d120fe1ebc fixed: grab list of FIP regions from FieldPropsManager 
not from SummaryConfig. the latter only holds regions with
summary keywords
 2023-12-04 13:24:32 +01:00
Bård Skaflestad
ea3b22480a Enable Loading Parallel NLDD Partition From File 
This commit adds support for loading a three-column NLDD
partitioning scheme of the form

    MPI_Rank  Cartesian_Index  NLDD_Domain_ID

from a text file.  In an MPI run it is assumed that the first column
holds integers in the range 0..MPI_Size()-1, and typically that each
such integer is listed at least once.  In a sequential run, the MPI
rank column is ignored.

With this scheme we can load the same partition files that we write,
for increased repeatability and determinism, and we can also
experiment with externally generated NLDD partitions.
 2023-11-17 17:39:17 +01:00
Bård Skaflestad
68fe118781 Make Compress/Count Partition Vector Helper Generally Available 
This function pair is useful also when loading a partition from
file to ensure that there are no gaps in block numbering.
 2023-11-17 09:17:46 +01:00
Bård Skaflestad
ed77c90238 Make Zoltan-Based Domain Partitioning MPI Aware 
This commit switches the current implementation of
'partitionCellsZoltan()', i.e., 'partitionCells("zoltan", ...)' into
using the MPI-aware ParallelNLDDPartitioningZoltan utility.  In
doing so we make 'partitionCellsZoltan()' private since its
availability is not guaranteed.  We also slightly reorder the
parameters and switch from passing a "Grid" into passing a
"GridView" as an argument to partitionCells(), and specialise this
function for the known grid views in OPM Flow.

We extract the Zoltan-related parameters out to an Entity-dependent
helper structure and move the complexity of forming this type to a
new helper function, BlackoilModelEbosNldd::partitionCells().
 2023-11-15 13:31:41 +01:00
Bård Skaflestad
27aaa28c71 Add Partitioner for Unstructured Connectivity Graph 
Invokes Zoltan library and requires MPI.  Client code constructs an
abstract connectivity graph by defining connections/edges through
the 'registerConnection()' member function.  May also impose a
restriction that certain cells/vertices be placed in the same
domain/block in the resulting partition.  Client code must supply a
callback function that defines globally unique cell/vertex/object
IDs, across all MPI ranks, for each vertex in the connectivity
graph.

Member function 'partitionElement()' forms the resulting partition
vector, the size of which is the total number of objects visible to
the local rank-typically the number of cells owned by the rank, and
the number of overlap cells--i.e., the size of the local grid view.
 2023-11-15 13:31:41 +01:00