884 Commits

Include renames

Author	SHA1	Message	Date
James McClure	1ed3428ef6	re-run clang format	2023-10-23 04:18:20 -04:00
James McClure	588d1a15c1	updates from ScaLBL	2023-10-22 09:53:45 -04:00
James McClure	111529ff5e	add voltage BC for d3q19 poisson solver	2022-10-27 08:15:21 -04:00
James McClure	f1ceb930ee	working on read/write for membrane coefficients	2022-10-26 16:16:59 -04:00
James McClure	ffe4f794de	fix swc stuff try 3	2022-08-27 16:30:03 -04:00
James McClure	9229de2875	fix swc stuff try 2	2022-08-27 16:06:30 -04:00
James McClure	fc4af2d712	fix swc thing	2022-08-27 15:40:32 -04:00
Mark Berrill	3cc12ac36e	Fixing memory leaks	2022-07-13 11:20:53 -04:00
Mark Berrill	ed8f5684fd	Fixing memory leak	2022-07-13 10:53:19 -04:00
James McClure	5204f48d45	fix memory leaks	2022-07-12 18:44:36 -04:00
James McClure	a9ed4a3b97	fix bug with SWC	2022-07-04 19:46:14 -04:00
James McClure	dc78491a9c	add offset to Domain for swc	2022-05-25 17:59:08 -04:00
James McClure	df27167212	SWC reader update 2	2022-05-25 16:28:58 -04:00
James McClure	57fc4cc8e1	SWC reader update	2022-05-25 16:21:34 -04:00
James McClure	e818ade293	shift swc data	2022-05-16 21:43:53 -04:00
James McClure	175e7bd00b	swc reader works with MPI	2022-05-16 11:22:38 -04:00
James McClure	c4a97c0589	support for SWC input format	2022-05-16 11:17:47 -04:00
James McClure	0e65364954	added support for swc file	2022-05-15 23:00:23 -04:00
James McClure	2acaa335aa	added membrane analysis capability	2022-05-13 20:44:33 -04:00
James E McClure	b6227dd823	multiple nvidia gpu working with membrane	2022-05-12 20:50:05 -04:00
James McClure	ad8c5f6e26	communication seems to work	2022-05-12 00:52:34 -04:00
James McClure	29e4c76561	membrane test works with new comm	2022-05-12 00:31:22 -04:00
James McClure	7c790e8802	updating membrane communication structure	2022-05-11 23:37:18 -04:00
James McClure	2894b740d0	add functions to copy send / recv list from ScaLBL	2022-05-11 17:12:23 -04:00
James McClure	4661cbdce4	debug gpu	2022-05-11 14:05:16 -04:00
James McClure	e677b0395f	add barrier to membrane transport	2022-05-09 06:32:58 -04:00
James McClure	c424e1d984	cleanup with help from valgrind	2022-05-06 16:21:37 -04:00
Zhe Rex Li	6959a02f7b	correct ion LB collison	2022-05-03 15:00:00 +10:00
Zhe Li	bdd0efd36e	build passed	2022-04-28 16:55:58 +10:00
James McClure	e3518e3482	added membrane properties to input db	2022-04-26 18:07:26 -04:00
James McClure	3e82370d6c	update cpu ion valence	2022-04-26 06:37:08 -04:00
James E McClure	3642a6ae9b	debug charge density problems on crusher	2022-04-24 15:55:23 -04:00
James E McClure	9043751281	debug crusher	2022-04-24 14:55:59 -04:00
James E McClure	36a5204882	a bunch of summit debug things to roll back later	2022-04-24 11:04:11 -04:00
James McClure	cf4f2b63da	update error analysis for Poisson solver	2022-04-22 15:17:52 -04:00
James McClure	2cbb4ce8cd	update print	2022-04-19 07:33:21 -04:00
James McClure	e613cba376	remove print staetements	2022-04-16 17:14:22 -04:00
James McClure	b183252947	remove bad warnings	2022-04-15 22:50:16 -04:00
James McClure	adeecbd122	add GPU functions for d3q19 poisson	2022-04-12 23:29:46 -04:00
James McClure	032a21a872	Poisson working pretty good now	2022-04-10 22:21:34 -04:00
James McClure	9c63613373	original wang poisson solver (broken)	2022-04-10 09:51:02 -04:00
James McClure	2bb2be845a	membrane starts working ok...	2022-04-08 16:44:37 -04:00
James McClure	9c013e6169	testing membrane ion transport	2022-04-06 22:25:05 -04:00
James McClure	cca06f7964	add testing functions to ScaLBL	2022-04-06 20:44:14 -04:00
James E McClure	f99af45c9b	Merge branch 'membrane' into tmp	2022-03-27 16:03:26 -04:00
James McClure	2c3272e423	updates and fix for user input reader	2022-03-22 17:31:12 -04:00
James McClure	16275ce1b9	werkin	2022-03-21 19:44:21 -04:00
James McClure	4927e54707	add single cell example	2022-03-20 15:13:53 -04:00
James McClure	51c88f0055	cell simulator runs	2022-03-20 11:22:46 -04:00
James McClure	702eaae1c1	try at membrane simulator	2022-03-18 18:08:44 -04:00