James McClure
|
b36d9dea93
|
read image
|
2021-09-01 07:34:40 -04:00 |
|
James McClure
|
f908e6f8ee
|
erge branch 'master' into FOM_dev
|
2021-08-30 11:49:38 -04:00 |
|
Mark Berrill
|
a55a030c3c
|
Updating build to support HIP as a language
|
2021-08-02 13:54:30 -04:00 |
|
Mark Berrill
|
f6690d2277
|
Cleaning up some compiler warnings
|
2021-07-19 13:36:04 -04:00 |
|
James E McClure
|
cd96365cd1
|
save state
|
2021-07-19 13:17:39 -04:00 |
|
James E McClure
|
147f0b9d15
|
added gpu wrapper test
|
2021-07-02 11:21:25 -04:00 |
|
JamesEMcclure
|
2ea3d8d491
|
playing with spock Gpu test
|
2021-07-02 10:25:38 -04:00 |
|
JamesEMcclure
|
8ef4651db8
|
create legacy mode for color simulator
|
2021-06-30 10:39:28 -04:00 |
|
JamesEMcclure
|
439584b22b
|
fix protocol bug
|
2021-06-30 10:34:19 -04:00 |
|
Mark Berrill
|
1d07c1f860
|
Modifying GPU aware MPI test to send multiple messages
|
2021-06-28 13:50:45 -04:00 |
|
Rex Zhe Li
|
de909820f8
|
merge master into FOM_dev
|
2021-06-27 19:53:52 -04:00 |
|
Mark Berrill
|
d6b0f45710
|
Adding simple test of GPU aware MPI
|
2021-06-24 16:12:23 -04:00 |
|
James E McClure
|
9ae7d78f2d
|
testing communication on spock
|
2021-06-16 20:05:14 -04:00 |
|
JamesEMcclure
|
b70071fc2a
|
cleanup color model
|
2021-06-16 13:30:12 -04:00 |
|
JamesEMcclure
|
898b209c94
|
add water seed protocol to flow adaptor
|
2021-06-16 10:28:46 -04:00 |
|
JamesEMcclure
|
4beee9a9a8
|
move image sequence loop out of flow adaptor loop
|
2021-06-15 16:33:05 -04:00 |
|
JamesEMcclure
|
a30f547af2
|
tweak flow adaptor
|
2021-06-15 16:24:10 -04:00 |
|
JamesEMcclure
|
1bb2a2a80f
|
Merge branch 'master' of github.com:JamesEMcClure/LBPM-WIA
|
2021-06-15 16:22:20 -04:00 |
|
JamesEMcclure
|
b856544341
|
add shell aggregation to FlowAdaptor
|
2021-06-15 16:22:13 -04:00 |
|
James McClure
|
39009362a8
|
fix image sequence bug
|
2021-06-14 20:24:05 -04:00 |
|
JamesEMcclure
|
7072ede5a4
|
add image sequence to FlowAdaptor
|
2021-06-14 16:33:24 -04:00 |
|
James McClure
|
d337023fd9
|
fix loop in lbpm_color_Simulator
|
2021-06-13 13:40:02 -04:00 |
|
James McClure
|
8327ff9d38
|
fractional flow protocl with endpoint termination
|
2021-06-13 10:08:32 -04:00 |
|
James McClure
|
9d968ee2ca
|
fix a few bugs
|
2021-06-11 17:29:07 -04:00 |
|
James McClure
|
2dd652d495
|
updates to fractional flow protocol
|
2021-06-11 15:56:29 -04:00 |
|
JamesEMcclure
|
cc1a280edc
|
kill more warnings
|
2021-06-09 16:41:36 -04:00 |
|
JamesEMcclure
|
c463c5182e
|
fix compiler warnings for data aggregator
|
2021-06-09 14:28:13 -04:00 |
|
Mark Berrill
|
e1c347d3c1
|
Merge branch 'FOM' of github.com:JamesEMcClure/LBPM-WIA into FOM
|
2021-06-02 15:36:51 -04:00 |
|
Mark Berrill
|
96ef15c5c6
|
Creating HDF5 writer using Xmdf for visualization
|
2021-06-02 15:36:44 -04:00 |
|
James McClure
|
9b0b5d2262
|
color model tweaks
|
2021-05-28 10:20:13 -04:00 |
|
James McClure
|
44c45d277f
|
flatten mass for fractional flow protocol
|
2021-05-27 16:29:44 -04:00 |
|
James McClure
|
782b55b389
|
rough version of fractional flow simulator
|
2021-05-19 14:14:32 -04:00 |
|
James McClure
|
dc86bc23db
|
only write debug in development mode
|
2021-04-04 20:30:01 -04:00 |
|
James McClure
|
c430f159ad
|
Merge branch 'master' into FOM_dev
|
2021-03-26 09:45:17 -04:00 |
|
James McClure
|
e947e0a192
|
drop test
|
2021-03-24 22:23:44 -04:00 |
|
James McClure
|
1ddf5e709e
|
refactor analysis to take color model as argument
|
2021-03-24 21:19:53 -04:00 |
|
Rex Zhe Li
|
0f94439a6b
|
1.revised relations of surface tension and W;2.reintroduce theta for better modele tuning;3.put chemical potential in debug output
|
2021-03-24 21:02:34 -04:00 |
|
James McClure
|
d913b9bdc8
|
added visualization capability for Lee model
|
2021-03-21 00:15:23 -04:00 |
|
James McClure
|
9fddfff384
|
fix merge conflict
|
2021-03-20 20:40:16 -04:00 |
|
Mark Berrill
|
59b7b9a0fe
|
Fixing issues with enums and the summary files
|
2021-03-18 09:41:39 -04:00 |
|
Mark Berrill
|
05c286de81
|
Merge
|
2021-03-17 10:31:54 -04:00 |
|
Mark Berrill
|
89704cbb10
|
Updating convertIO
|
2021-03-17 10:24:14 -04:00 |
|
James McClure
|
8c026a2f6d
|
test neighborlist
|
2021-03-17 06:35:19 -04:00 |
|
James McClure
|
cb32a4236b
|
update lee model tests
|
2021-03-17 06:26:15 -04:00 |
|
JamesEMcclure
|
de743e75b7
|
include convert IO
|
2021-03-17 05:15:17 -04:00 |
|
Mark Berrill
|
6d59317919
|
Cleaning up TestWriter
|
2021-03-16 17:21:52 -04:00 |
|
James McClure
|
b828f6e5e6
|
updating mixed gradient test
|
2021-03-15 12:58:24 -04:00 |
|
James McClure
|
aa04ad4898
|
fixed wide halo bug with lee model
|
2021-03-14 13:02:55 -04:00 |
|
James McClure
|
3f659a0cc2
|
adding mass conservation test
|
2021-03-11 13:55:47 -05:00 |
|
Rex Zhe Li
|
1a393ab266
|
fix typo and build pass
|
2021-02-25 21:25:29 -05:00 |
|
Rex Zhe Li
|
99f1d9b727
|
add a test routine for mixed gradient
|
2021-02-25 20:30:48 -05:00 |
|
Rex Zhe Li
|
e34170d232
|
built passed
|
2021-02-08 00:00:26 -05:00 |
|
Rex Zhe Li
|
98491ccd80
|
save the work2; to be complied and tested
|
2021-02-07 23:50:17 -05:00 |
|
Rex Zhe Li
|
7cdc358af2
|
code clean up
|
2021-02-01 00:39:21 -05:00 |
|
Rex Zhe Li
|
2ed34592d0
|
Merge branch 'FOM' into FOM_dev
|
2021-02-01 00:19:55 -05:00 |
|
Rex Zhe Li
|
3a6edc365d
|
build pass; ongoing model validation
|
2021-01-31 21:26:03 -05:00 |
|
Mark Berrill
|
90ba7ed65a
|
Fixing bug with analysis
|
2021-01-22 10:05:16 -05:00 |
|
Rex Zhe Li
|
fef81a0e47
|
resolve merge conflicts
|
2021-01-18 22:51:16 -05:00 |
|
James McClure
|
dc886091a1
|
looking at bug in writer
|
2021-01-17 15:01:56 -05:00 |
|
James McClure
|
9ee14bce01
|
wetting energy in analysis
|
2021-01-17 13:58:51 -05:00 |
|
James McClure
|
9051753f4c
|
wide halo updates
|
2021-01-17 12:37:13 -05:00 |
|
James McClure
|
2af6aff545
|
Merge branch 'tmpfix' into FOM
|
2021-01-15 17:13:08 -05:00 |
|
James McClure
|
c911a4f3d2
|
add wide halo to fom
|
2021-01-15 17:12:38 -05:00 |
|
James McClure
|
9bc8100a1d
|
debugging wide halo
|
2021-01-15 16:33:57 -05:00 |
|
James McClure
|
31234ed003
|
fix multiple init
|
2021-01-15 14:41:10 -05:00 |
|
Rex Zhe Li
|
e0416a676c
|
merge with electrokinetic and resolve merge conflicts
|
2021-01-14 05:20:47 -05:00 |
|
JamesEMcclure
|
a066fa6606
|
merge Lee model
|
2021-01-13 22:06:08 -05:00 |
|
JamesEMcclure
|
0fe3125833
|
merging multi-halo
|
2021-01-13 21:44:23 -05:00 |
|
James McClure
|
64b49f720e
|
merge complete / cpu tests
|
2021-01-06 11:58:43 -05:00 |
|
Rex Zhe Li
|
c9fadc30c9
|
Merge branch 'electrokinetic' of github.com:JamesEMcClure/LBPM-WIA into electrokinetic
|
2021-01-06 01:04:08 -05:00 |
|
Rex Zhe Li
|
432fab95b3
|
test done;add sine and cosine voltage input for Poisson solver
|
2021-01-06 01:03:18 -05:00 |
|
James McClure
|
7f4f74779c
|
fix the build
|
2021-01-05 18:43:44 -05:00 |
|
James McClure
|
345b43d9f8
|
FOM for tests
|
2021-01-05 16:08:03 -05:00 |
|
Rex Zhe Li
|
2b9d776113
|
save the work; to be compiled, tested and validated; add sine and cosine voltage input for Poisson solver
|
2021-01-04 20:13:48 -05:00 |
|
James McClure
|
20800ed7eb
|
partial merge
|
2021-01-04 19:33:27 -05:00 |
|
James McClure
|
2fc85dead8
|
merging electrokinetic & greyscale
|
2021-01-04 14:00:44 -05:00 |
|
James McClure
|
5df60909c2
|
add analysis interval to simulator
|
2021-01-04 00:07:11 -05:00 |
|
James McClure
|
9826ef5624
|
adding silo vis capabilities to electrochem
|
2020-12-29 14:04:43 -05:00 |
|
JamesEMcclure
|
057f7e4f57
|
fix CMakelists
|
2020-10-12 09:32:39 -04:00 |
|
JamesEMcclure
|
a245d9c9d6
|
update electro tests
|
2020-10-12 09:11:08 -04:00 |
|
JamesEMcclure
|
29e486a1a0
|
moving electrochem model tests to executables
|
2020-10-12 09:08:53 -04:00 |
|
James McClure
|
7244258135
|
merging greyscale and electrokinetic in ScaLBL
|
2020-10-09 15:05:14 -04:00 |
|
Rex Zhe Li
|
21d9e6c900
|
save the work;wait for validation results
|
2020-10-08 22:13:28 -04:00 |
|
Mark Berrill
|
523f96abdd
|
Fixing compile errors without MPI
|
2020-10-08 11:03:42 -04:00 |
|
Mark Berrill
|
34b75e2ccf
|
Getting HIP compiling on Summit
|
2020-10-07 13:36:42 -04:00 |
|
JamesEMcclure
|
af07ddb099
|
fixing build
|
2020-10-05 14:36:50 -04:00 |
|
James McClure
|
c232f076dc
|
adding wide halo gradient test
|
2020-10-01 16:41:17 -04:00 |
|
James McClure
|
cc654bb54b
|
adding wide halo gradient test
|
2020-10-01 16:36:16 -04:00 |
|
James McClure
|
1c1155d3b7
|
debug halo width
|
2020-09-30 15:15:57 -04:00 |
|
James McClure
|
5ed82a54f4
|
fix failing commm test
|
2020-09-30 15:14:28 -04:00 |
|
JamesEMcclure
|
624ec5a145
|
memory optimized layout with halo width
|
2020-09-30 15:10:18 -04:00 |
|
James McClure
|
7c16a76d1c
|
update pointer in tests
|
2020-09-30 12:00:58 -04:00 |
|
James McClure
|
9f1e170a47
|
update pointer in tests
|
2020-09-30 11:57:25 -04:00 |
|
James McClure
|
e54ab8e195
|
update pointer in tests
|
2020-09-30 11:54:44 -04:00 |
|
James McClure
|
fed2fc4304
|
update pointer in tests
|
2020-09-30 11:53:28 -04:00 |
|
James McClure
|
8d8a22a374
|
add test wide halo
|
2020-09-30 11:46:23 -04:00 |
|
James McClure
|
dfa0d33180
|
add test color grad
|
2020-09-30 11:45:17 -04:00 |
|
Rex Zhe Li
|
039978cc81
|
GPU version is available now
|
2020-09-20 11:00:36 -04:00 |
|
Rex Zhe Li
|
11e9af54b6
|
CPU only;finish preliminary work on testing Poisson and Ion models and their coupling
|
2020-09-11 22:56:00 -04:00 |
|
Rex Zhe Li
|
20c8cc9c3b
|
update PoissonSolver and fix numerous bugs
|
2020-09-02 11:37:23 -04:00 |
|
Rex Zhe Li
|
aa26fcafda
|
fix miscellaneous bugs and update the data structure of electric potential
|
2020-08-28 11:15:55 -04:00 |
|
Rex Zhe Li
|
59ffd7bfd6
|
fix several miscellaneous bugs
|
2020-08-20 22:47:10 -04:00 |
|
Rex Zhe Li
|
d24198e76a
|
done cleaning up the code
|
2020-08-19 22:22:35 -04:00 |
|
Rex Zhe Li
|
d8a1837ba0
|
save the work; to be continued to clean up the code
|
2020-08-19 11:31:32 -04:00 |
|
Rex Zhe Li
|
2180f7b2bf
|
resolve merge conflict
|
2020-08-18 18:02:28 -04:00 |
|
Rex Zhe Li
|
5756d6f138
|
fix a few trivial bugs; add some checkpoint print; still debugging
|
2020-08-18 12:40:41 -04:00 |
|
Rex Zhe Li
|
771f679f5c
|
add output; CPU version compiled; to be tested
|
2020-08-17 09:59:22 -04:00 |
|
Rex Zhe Li
|
85fc59190c
|
save the work;CPU version compiled; to be tested
|
2020-08-16 11:20:11 -04:00 |
|
Rex Zhe Li
|
3a162849a0
|
save the work;untested
|
2020-08-14 14:23:22 -04:00 |
|
Rex Zhe Li
|
28988ef6ba
|
save the work;untested
|
2020-08-10 12:03:28 -04:00 |
|
Rex Zhe Li
|
dff4e3d536
|
save the work;to be continued
|
2020-08-07 17:44:02 -04:00 |
|
JamesEMcclure
|
fcdb84b2ad
|
electro skeleton compiles
|
2020-08-06 16:06:52 -04:00 |
|
James McClure
|
5e6a9f552c
|
Adding skeleton for electrokinetic LBM
|
2020-08-06 15:41:40 -04:00 |
|
Mark Berrill
|
8c5dd2e43a
|
Adding MPI test
|
2020-07-20 13:41:48 -04:00 |
|
James E McClure
|
4d2174cedb
|
update Euler characteristic
|
2020-06-29 14:18:05 -04:00 |
|
James McClure
|
07ea37d2f2
|
at device test
|
2020-06-27 15:16:13 -04:00 |
|
JamesEMcclure
|
1a5b46156d
|
fix Torus
|
2020-06-24 14:01:10 -04:00 |
|
James McClure
|
534410bb29
|
add Minkowski to TestTorus
|
2020-06-24 13:48:53 -04:00 |
|
Rex Zhe Li
|
4434bfe282
|
GPU only, make greyscaleColor equivalent single-phase model available
|
2020-06-22 13:39:51 -04:00 |
|
Rex Zhe Li
|
2621a7718f
|
Greyscale Color model; both CPU and GPU versions are ready
|
2020-06-15 22:41:01 -04:00 |
|
James E McClure
|
14826cba1f
|
make final filter optional
|
2020-05-18 11:12:42 -04:00 |
|
Rex Zhe Li
|
42277520ed
|
update output writing
|
2020-05-07 19:09:26 -04:00 |
|
Rex Zhe Li
|
8e2efa8f05
|
GreyscaleSC model;GPU only;save the work;model does not function correctly
|
2020-04-30 23:42:17 -04:00 |
|
Rex Zhe Li
|
5a8f4f60fc
|
GPU only;complete renaming everything about the old greyscaleColor model to greyscaleFE
|
2020-04-25 17:12:43 -04:00 |
|
Rex Zhe Li
|
86c3217a0f
|
rename the two-phase FE-based greyscale model; step 3
|
2020-04-25 17:03:17 -04:00 |
|
Rex Zhe Li
|
4c84ab8eb9
|
GPU ONLY; clean up the two-phase greyscale code; rename the old greyscaleColor to greyscaleFE
|
2020-04-25 17:01:01 -04:00 |
|
James McClure
|
67896fcbe2
|
remove debug dump
|
2020-04-17 18:35:47 -04:00 |
|
James McClure
|
8dc9aed0ab
|
fix mass conservation test
|
2020-04-17 17:55:00 -04:00 |
|
James McClure
|
d1d92ea6bb
|
debug mass conservation test
|
2020-04-10 21:31:44 -04:00 |
|
James McClure
|
bdf8539f40
|
debugging strange mass conservation issue
|
2020-04-10 15:03:15 -04:00 |
|
Rex Zhe Li
|
cc14324c33
|
GPU version ONLY; two-phase greyscale model; save the work
|
2020-04-07 15:29:33 -04:00 |
|
JamesEMcclure
|
b4a51e266b
|
remove warnings for greyscale
|
2020-04-02 10:55:04 -04:00 |
|
JamesEMcclure
|
ec634d9326
|
Merge branch 'Greyscale' of github.com:JamesEMcClure/LBPM-WIA into bugfix
|
2020-04-02 10:33:04 -04:00 |
|
JamesEMcclure
|
28f3f9dcf8
|
using aggregator to write 1x 2x data
|
2020-03-21 13:02:17 -04:00 |
|
JamesEMcclure
|
8645d0b2a7
|
write full refined ID
|
2020-03-21 10:42:45 -04:00 |
|
James E McClure
|
05ed256b30
|
adding refine options
|
2020-03-21 10:37:32 -04:00 |
|
JamesEMcclure
|
dbbd8e30b7
|
fix refine pp
|
2020-03-21 10:32:16 -04:00 |
|
James E McClure
|
b206ad80a2
|
use Filename in refine pp
|
2020-03-21 10:06:36 -04:00 |
|
JamesEMcclure
|
afbef50752
|
update lbpm_refine_pp
|
2020-03-21 10:03:20 -04:00 |
|
James E McClure
|
ad20322f31
|
refactor refine pp tool
|
2020-03-21 09:53:47 -04:00 |
|
JamesEMcclure
|
05cafcb525
|
fix failed merge
|
2020-03-17 21:44:45 -04:00 |
|
JamesEMcclure
|
9f5b44dfe4
|
Revert "Moving more MPI calls to the wrapper"
This reverts commit 0f91767b6c.
|
2020-03-17 21:23:18 -04:00 |
|
Mark Berrill
|
94156e066e
|
Trying to fix bug with MPI communication
|
2020-03-12 10:26:17 -04:00 |
|
Rex Zhe Li
|
a372d60450
|
resolve some minor issues after the MPI backend updates
|
2020-02-04 13:58:06 -05:00 |
|
Rex Zhe Li
|
72ab9f803e
|
merge with morphLBM to incorporate the newest backend updates
|
2020-02-04 13:28:57 -05:00 |
|
JamesEMcclure
|
79669b30d0
|
merging with morphLBM (may be some problems still)
|
2020-02-03 14:30:03 -05:00 |
|
Mark Berrill
|
0f91767b6c
|
Moving more MPI calls to the wrapper
|
2020-01-28 12:33:36 -05:00 |
|
Mark Berrill
|
d1f714a82e
|
Adding MPI wrapper class
|
2020-01-28 08:51:32 -05:00 |
|
Mark Berrill
|
acb2d30454
|
Fixing compile warnings
|
2020-01-22 12:19:04 -05:00 |
|
Mark Berrill
|
78c2e710b9
|
Fixing compile warnings
|
2020-01-22 12:01:29 -05:00 |
|