James McClure
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777e216b35
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restart for Poisson model
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2022-07-29 18:11:32 -04:00 |
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Mark Berrill
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3cc12ac36e
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Fixing memory leaks
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2022-07-13 11:20:53 -04:00 |
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Mark Berrill
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ed8f5684fd
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Fixing memory leak
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2022-07-13 10:53:19 -04:00 |
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James McClure
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c148f907eb
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fix zlib download path
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2022-07-13 07:55:37 -04:00 |
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James McClure
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5204f48d45
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fix memory leaks
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2022-07-12 18:44:36 -04:00 |
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James McClure
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b7910dbefe
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fix compiler warnings
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2022-07-06 21:33:59 -04:00 |
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James McClure
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5a37f7865f
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add BC to poisson solver
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2022-07-06 19:35:08 -04:00 |
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James McClure
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a9ed4a3b97
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fix bug with SWC
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2022-07-04 19:46:14 -04:00 |
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James McClure
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1c903a3380
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add performance counters to ion / poisson solvers
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2022-06-11 20:49:01 -04:00 |
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James McClure
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be8f508b64
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add input files for simple bacteria
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2022-05-26 16:43:34 -04:00 |
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James McClure
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dc78491a9c
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add offset to Domain for swc
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2022-05-25 17:59:08 -04:00 |
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James McClure
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df27167212
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SWC reader update 2
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2022-05-25 16:28:58 -04:00 |
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James McClure
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57fc4cc8e1
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SWC reader update
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2022-05-25 16:21:34 -04:00 |
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James McClure
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e818ade293
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shift swc data
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2022-05-16 21:43:53 -04:00 |
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James McClure
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175e7bd00b
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swc reader works with MPI
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2022-05-16 11:22:38 -04:00 |
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James McClure
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c4a97c0589
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support for SWC input format
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2022-05-16 11:17:47 -04:00 |
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James McClure
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0e65364954
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added support for swc file
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2022-05-15 23:00:23 -04:00 |
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James McClure
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2acaa335aa
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added membrane analysis capability
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2022-05-13 20:44:33 -04:00 |
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James E McClure
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b6227dd823
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multiple nvidia gpu working with membrane
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2022-05-12 20:50:05 -04:00 |
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James McClure
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cf3bc417ce
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Merge branch 'test_poisson' of github.com:JamesEMcClure/LBPM-WIA into test_poisson
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2022-05-12 07:09:39 -04:00 |
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James McClure
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ffe4bdd917
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update hip
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2022-05-12 06:58:10 -04:00 |
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James McClure
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0e769186a5
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update gpu routines first try
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2022-05-12 06:54:55 -04:00 |
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Zhe Rex Li
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cb995c7d00
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add sample files for plane membrane
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2022-05-12 15:39:50 +10:00 |
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James McClure
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ad8c5f6e26
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communication seems to work
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2022-05-12 00:52:34 -04:00 |
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James McClure
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29e4c76561
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membrane test works with new comm
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2022-05-12 00:31:22 -04:00 |
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James McClure
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7c790e8802
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updating membrane communication structure
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2022-05-11 23:37:18 -04:00 |
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James McClure
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2894b740d0
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add functions to copy send / recv list from ScaLBL
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2022-05-11 17:12:23 -04:00 |
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James McClure
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4661cbdce4
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debug gpu
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2022-05-11 14:05:16 -04:00 |
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James McClure
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50c7429995
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debug gpu launch issue for ion
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2022-05-11 10:32:53 -04:00 |
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James McClure
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e677b0395f
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add barrier to membrane transport
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2022-05-09 06:32:58 -04:00 |
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James McClure
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9e74f49812
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add new ion code for cuda
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2022-05-08 05:49:23 -04:00 |
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James McClure
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cf2b69e7ee
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fix missing bracket
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2022-05-07 19:36:14 -04:00 |
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James McClure
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6f7740fc3e
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Merge branch 'tmp' into test_poisson
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2022-05-07 19:32:54 -04:00 |
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James McClure
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9037f51c22
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add hip for ion update
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2022-05-07 19:32:51 -04:00 |
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James McClure
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459d6064c1
|
merge to membrane
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2022-05-06 20:41:03 -04:00 |
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James McClure
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9f76e7b1e8
|
update to cell vis routine
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2022-05-06 19:03:19 -04:00 |
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James McClure
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c424e1d984
|
cleanup with help from valgrind
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2022-05-06 16:21:37 -04:00 |
|
Zhe Li
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ba6d438630
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this makes mpi hang error explicit;to be debugged
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2022-05-04 14:34:31 +10:00 |
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Zhe Rex Li
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01ffcce379
|
update print-out
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2022-05-03 17:10:26 +10:00 |
|
Zhe Rex Li
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de52cf53b9
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add more tweaks for cell simulator
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2022-05-03 16:32:42 +10:00 |
|
Zhe Li
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9c2c216af8
|
udpate output precision
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2022-05-03 15:55:40 +10:00 |
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Zhe Rex Li
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6959a02f7b
|
correct ion LB collison
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2022-05-03 15:00:00 +10:00 |
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Zhe Rex Li
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47db000ba6
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correct D3Q7 Poisson LB algorithm
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2022-04-29 20:36:38 +10:00 |
|
Zhe Li
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025987e53b
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make further corrections
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2022-04-28 23:59:13 +10:00 |
|
Zhe Li
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bdd0efd36e
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build passed
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2022-04-28 16:55:58 +10:00 |
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Zhe Rex Li
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a00a3606f7
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add functionality for user to choose either D3Q7 or D3Q19 lattice for Poisson;to be built and tested
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2022-04-28 16:21:04 +10:00 |
|
Zhe Li
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678925ec15
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correct use_membrane functionality
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2022-04-28 15:22:23 +10:00 |
|
Zhe Li
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754b1ad9d9
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update executable list and NP_cell simulator
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2022-04-27 14:04:11 +10:00 |
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Zhe Rex Li
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86be316977
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merge membrane into test_poisson
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2022-04-27 12:04:53 +10:00 |
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James McClure
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8ea560ca66
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update cell db
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2022-04-26 19:01:30 -04:00 |
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