Commit Graph

4472 Commits

Author SHA1 Message Date
James McClure
14c1037d7d add GPU voltage bc 2022-10-28 07:20:45 -04:00
James McClure
111529ff5e add voltage BC for d3q19 poisson solver 2022-10-27 08:15:21 -04:00
James McClure
95233d61a7 update configure script 2022-10-26 20:24:56 -04:00
James McClure
79484ab8fa update poisson solver 2022-10-26 20:24:45 -04:00
James McClure
613a43c309 vis capabilities for poisson, default d3q19 2022-10-26 16:17:23 -04:00
James McClure
f1ceb930ee working on read/write for membrane coefficients 2022-10-26 16:16:59 -04:00
James McClure
e9096dbfc3 update docs 2022-08-31 14:08:59 -04:00
James McClure
ffe4f794de fix swc stuff try 3 2022-08-27 16:30:03 -04:00
James McClure
9229de2875 fix swc stuff try 2 2022-08-27 16:06:30 -04:00
James McClure
fc4af2d712 fix swc thing 2022-08-27 15:40:32 -04:00
James McClure
372ebd3af2 add flat field to accelerate Poisson 2022-08-25 15:46:47 -04:00
James E McClure
045a955626 fix cuda thing 2022-08-22 22:00:19 -04:00
James McClure
b423bcb42b minor cleanup of gpu poisson 2022-08-21 08:53:05 -04:00
James McClure
2b2bdee447 fix error in gpu poisson 2022-08-16 11:23:30 -04:00
James McClure
4a016eee6c porosity factor in effperm 2022-08-12 18:34:50 -04:00
James McClure
d50c98c71a porosity factor in effperm 2022-08-12 18:33:49 -04:00
James McClure
6ad23248fd porosity factor in effperm 2022-08-12 18:31:53 -04:00
James McClure
189408f769 porosity factor in effperm 2022-08-12 18:29:45 -04:00
James McClure
f233ec616b fix workflow indentation 2022-08-07 09:11:41 -04:00
James McClure
2a8c88496c trying to fix yaml 2022-08-05 21:20:19 -04:00
James McClure
58ae63fe87 fix bug in ion model restart 2022-08-02 15:36:35 -04:00
James McClure
777e216b35 restart for Poisson model 2022-07-29 18:11:32 -04:00
Mark Berrill
3cc12ac36e Fixing memory leaks 2022-07-13 11:20:53 -04:00
Mark Berrill
ed8f5684fd Fixing memory leak 2022-07-13 10:53:19 -04:00
James McClure
c148f907eb fix zlib download path 2022-07-13 07:55:37 -04:00
James McClure
5204f48d45 fix memory leaks 2022-07-12 18:44:36 -04:00
James McClure
b7910dbefe fix compiler warnings 2022-07-06 21:33:59 -04:00
James McClure
5a37f7865f add BC to poisson solver 2022-07-06 19:35:08 -04:00
James McClure
a9ed4a3b97 fix bug with SWC 2022-07-04 19:46:14 -04:00
James McClure
1c903a3380 add performance counters to ion / poisson solvers 2022-06-11 20:49:01 -04:00
James McClure
be8f508b64 add input files for simple bacteria 2022-05-26 16:43:34 -04:00
James McClure
dc78491a9c add offset to Domain for swc 2022-05-25 17:59:08 -04:00
James McClure
df27167212 SWC reader update 2 2022-05-25 16:28:58 -04:00
James McClure
57fc4cc8e1 SWC reader update 2022-05-25 16:21:34 -04:00
James McClure
e818ade293 shift swc data 2022-05-16 21:43:53 -04:00
James McClure
175e7bd00b swc reader works with MPI 2022-05-16 11:22:38 -04:00
James McClure
c4a97c0589 support for SWC input format 2022-05-16 11:17:47 -04:00
James McClure
0e65364954 added support for swc file 2022-05-15 23:00:23 -04:00
James McClure
2acaa335aa added membrane analysis capability 2022-05-13 20:44:33 -04:00
James E McClure
b6227dd823 multiple nvidia gpu working with membrane 2022-05-12 20:50:05 -04:00
James McClure
cf3bc417ce Merge branch 'test_poisson' of github.com:JamesEMcClure/LBPM-WIA into test_poisson 2022-05-12 07:09:39 -04:00
James McClure
ffe4bdd917 update hip 2022-05-12 06:58:10 -04:00
James McClure
0e769186a5 update gpu routines first try 2022-05-12 06:54:55 -04:00
Zhe Rex Li
cb995c7d00 add sample files for plane membrane 2022-05-12 15:39:50 +10:00
James McClure
ad8c5f6e26 communication seems to work 2022-05-12 00:52:34 -04:00
James McClure
29e4c76561 membrane test works with new comm 2022-05-12 00:31:22 -04:00
James McClure
7c790e8802 updating membrane communication structure 2022-05-11 23:37:18 -04:00
James McClure
2894b740d0 add functions to copy send / recv list from ScaLBL 2022-05-11 17:12:23 -04:00
James McClure
4661cbdce4 debug gpu 2022-05-11 14:05:16 -04:00
James McClure
50c7429995 debug gpu launch issue for ion 2022-05-11 10:32:53 -04:00