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Author	SHA1	Message	Date
James McClure	95233d61a7	update configure script	2022-10-26 20:24:56 -04:00
James McClure	79484ab8fa	update poisson solver	2022-10-26 20:24:45 -04:00
James McClure	613a43c309	vis capabilities for poisson, default d3q19	2022-10-26 16:17:23 -04:00
James McClure	f1ceb930ee	working on read/write for membrane coefficients	2022-10-26 16:16:59 -04:00
James McClure	e9096dbfc3	update docs	2022-08-31 14:08:59 -04:00
James McClure	ffe4f794de	fix swc stuff try 3	2022-08-27 16:30:03 -04:00
James McClure	9229de2875	fix swc stuff try 2	2022-08-27 16:06:30 -04:00
James McClure	fc4af2d712	fix swc thing	2022-08-27 15:40:32 -04:00
James McClure	372ebd3af2	add flat field to accelerate Poisson	2022-08-25 15:46:47 -04:00
James E McClure	045a955626	fix cuda thing	2022-08-22 22:00:19 -04:00
James McClure	b423bcb42b	minor cleanup of gpu poisson	2022-08-21 08:53:05 -04:00
James McClure	2b2bdee447	fix error in gpu poisson	2022-08-16 11:23:30 -04:00
James McClure	4a016eee6c	porosity factor in effperm	2022-08-12 18:34:50 -04:00
James McClure	d50c98c71a	porosity factor in effperm	2022-08-12 18:33:49 -04:00
James McClure	6ad23248fd	porosity factor in effperm	2022-08-12 18:31:53 -04:00
James McClure	189408f769	porosity factor in effperm	2022-08-12 18:29:45 -04:00
James McClure	f233ec616b	fix workflow indentation	2022-08-07 09:11:41 -04:00
James McClure	2a8c88496c	trying to fix yaml	2022-08-05 21:20:19 -04:00
James McClure	58ae63fe87	fix bug in ion model restart	2022-08-02 15:36:35 -04:00
James McClure	777e216b35	restart for Poisson model	2022-07-29 18:11:32 -04:00
Mark Berrill	3cc12ac36e	Fixing memory leaks	2022-07-13 11:20:53 -04:00
Mark Berrill	ed8f5684fd	Fixing memory leak	2022-07-13 10:53:19 -04:00
James McClure	c148f907eb	fix zlib download path	2022-07-13 07:55:37 -04:00
James McClure	5204f48d45	fix memory leaks	2022-07-12 18:44:36 -04:00
James McClure	b7910dbefe	fix compiler warnings	2022-07-06 21:33:59 -04:00
James McClure	5a37f7865f	add BC to poisson solver	2022-07-06 19:35:08 -04:00
James McClure	a9ed4a3b97	fix bug with SWC	2022-07-04 19:46:14 -04:00
James McClure	1c903a3380	add performance counters to ion / poisson solvers	2022-06-11 20:49:01 -04:00
James McClure	be8f508b64	add input files for simple bacteria	2022-05-26 16:43:34 -04:00
James McClure	dc78491a9c	add offset to Domain for swc	2022-05-25 17:59:08 -04:00
James McClure	df27167212	SWC reader update 2	2022-05-25 16:28:58 -04:00
James McClure	57fc4cc8e1	SWC reader update	2022-05-25 16:21:34 -04:00
James McClure	e818ade293	shift swc data	2022-05-16 21:43:53 -04:00
James McClure	175e7bd00b	swc reader works with MPI	2022-05-16 11:22:38 -04:00
James McClure	c4a97c0589	support for SWC input format	2022-05-16 11:17:47 -04:00
James McClure	0e65364954	added support for swc file	2022-05-15 23:00:23 -04:00
James McClure	2acaa335aa	added membrane analysis capability	2022-05-13 20:44:33 -04:00
James E McClure	b6227dd823	multiple nvidia gpu working with membrane	2022-05-12 20:50:05 -04:00
James McClure	cf3bc417ce	Merge branch 'test_poisson' of github.com:JamesEMcClure/LBPM-WIA into test_poisson	2022-05-12 07:09:39 -04:00
James McClure	ffe4bdd917	update hip	2022-05-12 06:58:10 -04:00
James McClure	0e769186a5	update gpu routines first try	2022-05-12 06:54:55 -04:00
Zhe Rex Li	cb995c7d00	add sample files for plane membrane	2022-05-12 15:39:50 +10:00
James McClure	ad8c5f6e26	communication seems to work	2022-05-12 00:52:34 -04:00
James McClure	29e4c76561	membrane test works with new comm	2022-05-12 00:31:22 -04:00
James McClure	7c790e8802	updating membrane communication structure	2022-05-11 23:37:18 -04:00
James McClure	2894b740d0	add functions to copy send / recv list from ScaLBL	2022-05-11 17:12:23 -04:00
James McClure	4661cbdce4	debug gpu	2022-05-11 14:05:16 -04:00
James McClure	50c7429995	debug gpu launch issue for ion	2022-05-11 10:32:53 -04:00
James McClure	e677b0395f	add barrier to membrane transport	2022-05-09 06:32:58 -04:00
James McClure	9e74f49812	add new ion code for cuda	2022-05-08 05:49:23 -04:00