Commit Graph

1590 Commits

Author SHA1 Message Date
James McClure
1512df8fff Merge branch 'master' of github.com:JamesEMcClure/LBPM-WIA 2016-10-10 11:14:05 -04:00
James McClure
b09a97cdac Fixed scope for MPI to avoid errors in lbpm_segmented_decomp 2016-10-10 11:13:55 -04:00
zherexli
4412eca8ae Update the image segmentation to process a group of input images 2016-10-03 17:55:57 -04:00
James E McClure
9f844563ba Added basename to SegmentMicromodelTiff_Group.py 2016-10-03 15:10:38 -04:00
zherexli
71b141c2a9 Add tools for segmenting experimental images to binary image data 2016-10-03 12:18:57 -04:00
zherexli
4964a8dd8d fix the bug in squaretube so to properly generate a square tube in different orientations 2016-10-03 12:00:45 -04:00
James E McClure
f79a66e5d3 ALlowing orientation for square tube to be modified 2016-09-15 10:54:27 -04:00
James E McClure
707817fb1b Merge branch 'master' of github.com:JamesEMcClure/LBPM-WIA 2016-09-15 10:33:55 -04:00
James E McClure
88c257b789 removed pesky LICENSE.txt 2016-09-08 13:49:19 -04:00
James E McClure
7845439d80 restored original license 2016-09-08 13:45:48 -04:00
James E McClure
0e002f3b8f merge 2016-09-08 13:43:11 -04:00
James E McClure
cd19275fa2 For some reason LICENSE.txt disappeared 2016-09-08 13:42:29 -04:00
James E McClure
5e89555e7f Updated lbpm_square_tube to ensure clean MPI exit 2016-09-02 14:58:23 -04:00
rexli
6a492e48d3 Merge branch 'master' of github.com:JamesEMcClure/LBPM-WIA 2016-09-02 14:41:59 -04:00
rexzheli
e7987c9cc9 Fixed the setup for the square tube test 2016-09-02 14:38:34 -04:00
James E McClure
e0e62b8ed3 Cleaned up build instructions to README.md 2016-09-01 14:32:16 -04:00
James E McClure
e2312da4ec Added basic build instructions to README.md 2016-09-01 14:30:25 -04:00
James E McClure
b34d1f1f29 Added example job submission script for titan 2016-08-12 13:50:23 -04:00
James E McClure
262ce75e1c Added initialization script for Imbibition (bash) 2016-08-12 13:45:41 -04:00
James E McClure
ae24b5888f Re-enabled dynamic work assignment for connected components in CUDA version 2016-08-09 15:17:20 -04:00
James E McClure
218377e445 Merge branch 'master' of https://github.com/JamesEMcClure/LBPM-WIA 2016-08-07 07:55:02 -04:00
James E McClure
46324c9818 setup drainage workflow 2016-08-07 07:54:46 -04:00
James E McClure
8005aa51d1 Merge branch 'master' of github.com:JamesEMcClure/LBPM-WIA 2016-08-06 19:07:11 -04:00
James E McClure
482922fe27 Added first draft of imbibition script 2016-08-06 19:07:04 -04:00
James E McClure
1142df785b Added pore size quartiles to lbpm_morph_pp 2016-08-06 14:35:19 -04:00
James E McClure
79aaf222d4 Pore size histogram finished for lbpm_morph_pp 2016-08-06 12:50:45 -04:00
James E McClure
5d03313a0b Pore size histogram working in lbpm_morph_pp 2016-08-06 11:43:12 -04:00
James E McClure
96a5acf96b Histogram in lbpm_morph_cpp (compiles) 2016-08-06 11:10:41 -04:00
James E McClure
bbe4c42d0f Adding histogram for pore size distribution in lbpm_morph_pp 2016-08-06 11:03:26 -04:00
James E McClure
f3ec60922a Fixed bug so that pore sizes are written 2016-08-06 08:27:24 -04:00
James E McClure
e14018417d Merge branch 'master' of https://github.com/JamesEMcClure/LBPM-WIA 2016-08-02 15:01:24 -04:00
James E McClure
2410a4aee4 fixed bug on eos 2016-08-02 15:01:13 -04:00
James E McClure
769ba9d4b1 Fixed bug in lbpm_color_simulator.h where the file stream was not provided to fprintf; added extra functionality to morphological preprocessors to print pore size 2016-08-02 15:00:41 -04:00
James E McClure
c706bcd0fc Editing morphological initialization scripts to generate multiple states 2016-08-01 21:49:42 -04:00
James E McClure
d383712a83 workflow/drainage/setup-drain.py reads csv file containing morphological drainage data and sets up simulation directories with input file 2016-07-31 14:44:12 -04:00
James E McClure
c472c9c245 Setup script for mophological drainage (not complete, but basic python functionality is there) 2016-07-31 11:09:53 -04:00
James E McClure
ee2869ab71 Write Restart.txt file in lbpm_color_simulator with timestep info 2016-07-30 15:22:56 -04:00
James E McClure
791d30a15d Allowing non-cubic domains for lbpm_permeability_simulator 2016-07-26 08:47:36 -04:00
James E McClure
8f50bb315e No longer mandating cubic domain in lbpm_color_simulator 2016-07-25 14:58:36 -04:00
James McClure
1cc1c82427 Fixed bugs in swap algorithm for D3Q19, checked D3Q7 also which I think was right 2016-07-25 11:09:05 -04:00
James McClure
f6a0d331be fixed bug in D3Q19 unpack routine 2016-07-25 10:34:50 -04:00
James E McClure
a76ed8867f Updating scripts for Eos build 2016-07-25 09:46:34 -04:00
James E McClure
fd9ad4b2db updates to lbpm_morph_pp to make things more accurate in under-resolved images 2016-07-25 09:43:29 -04:00
James E McClure
d12ab9da94 Updates to lbpm_color_simulator (restart) 2016-07-25 09:42:57 -04:00
James E McClure
c5baceae76 Deleted return statement in lbpm_segmented_decomp 2016-07-23 10:41:11 -04:00
James E McClure
c1bb5b6a2c Added barrier to lbpm_setgmented_decomp 2016-07-23 10:16:16 -04:00
James E McClure
f16f72195b Added Restart.txt so that simulations can restart from the correct timestep 2016-07-13 10:23:11 -04:00
James E McClure
30bd9ed73a fixed merge conflicts for lbpm_uCT_maskfilter 2016-06-28 16:37:54 -04:00
James E McClure
0fc1a06cc1 Added basic analysis to lbpm_uCT_maskfilter 2016-06-28 16:35:54 -04:00
Mark Berrill
845158f593 Forgot a file 2016-06-28 16:02:54 -04:00